Gene annotation
Transcriptome id Sobic.003G179000.1
Synonym Sb03g023240
Functional annotation dienelactone hydrolase family protein, expressed
UniProt C5XM91
Pfam PF12695
Panther DB PTHR17630
NCBI CDD KOG3043; Predicted hydrolase related to dienelactone hydrolase
KEGG Orthology K01061; carboxymethylenebutenolidase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G32520 : alpha/beta-Hydrolases superfamily protein
RAP-DB (Rice) LOC_Os01g34700.1 : dienelactone hydrolase family protein, expressed
MaizeGDB (Corn) Zm00025a028868
Brachypodium KQK08194
Barley HORVU3Hr1G017660.4 , HORVU3Hr1G017660.1 , HORVU3Hr1G017660.3 , HORVU3Hr1G017660.2 , HORVU3Hr1G017700.4 , HORVU3Hr1G017700.2 , HORVU3Hr1G017700.3 , HORVU3Hr1G017700.1
Wheat TraesCS3A02G098200 , TraesCS3B02G113800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G179000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G134800 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K00627: DLAT, aceF, pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase)
2 Sobic.007G220900 ribosomal L9, putative, expressed K02939: RP-L9, MRPL9, large subunit ribosomal protein L9
3 Sobic.007G112100 enoyl-acyl-carrier-protein reductase NADH, chloroplast precursor, expressed K00208: enoyl-[acyl-carrier protein] reductase I
4 Sobic.002G304400 expressed protein -
5 Sobic.002G101000 mitochondrial prohibitin complex protein 2, putative, expressed K17081: prohibitin 2
6 Sobic.001G460100 heparanase-like protein precursor, putative, expressed K07964: heparanase
7 Sobic.009G052600 universal stress protein domain containing protein, putative, expressed -
8 Sobic.006G157100 sphingolipid delta desaturase, putative, expressed K04712: sphingolipid 4-desaturase/C4-monooxygenase
9 Sobic.001G397000 argininosuccinate lyase, putative, expressed K01755: argH, argininosuccinate lyase
10 Sobic.010G125100 39S ribosomal protein L46, mitochondrial precursor, putative, expressed K17427: large subunit ribosomal protein L46
11 Sobic.002G332200 proteasome inhibitor-related, putative, expressed K06700: proteasome inhibitor subunit 1 (PI31)
12 Sobic.004G033200 expressed protein -
13 Sobic.001G081900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@semialdehyde dehydrogenase, NAD binding domain containing protein, putative, expressed K00133: aspartate-semialdehyde dehydrogenase
14 Sobic.010G073500 3-oxoacyl-synthase, putative, expressed K09458: fabF, OXSM, 3-oxoacyl-[acyl-carrier-protein] synthase II
15 Sobic.006G043700 3-oxoacyl-reductase, chloroplast precursor, putative, expressed K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase
16 Sobic.001G155500 transketolase, putative, expressed K00162: PDHB, pyruvate dehydrogenase E1 component beta subunit
17 Sobic.001G167500 ribosomal protein L25, putative, expressed K02897: RP-L25, large subunit ribosomal protein L25
18 Sobic.001G410200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@OsAPx1 - Cytosolic Ascorbate Peroxidase encoding gene 1-8, expressed K00434: L-ascorbate peroxidase
19 Sobic.009G052200 dihydrolipoyl dehydrogenase, putative, expressed K00382: DLD, lpd, dihydrolipoamide dehydrogenase
20 Sobic.009G195700 hydrolase, alpha/beta fold family domain containing protein, expressed K01259: proline iminopeptidase


Gene co-expression network
sample Sobic003G179000 Sobic003G179000 Sobic007G134800 Sobic007G134800 Sobic003G179000--Sobic007G134800 Sobic007G220900 Sobic007G220900 Sobic003G179000--Sobic007G220900 Sobic007G112100 Sobic007G112100 Sobic003G179000--Sobic007G112100 Sobic002G304400 Sobic002G304400 Sobic003G179000--Sobic002G304400 Sobic002G101000 Sobic002G101000 Sobic003G179000--Sobic002G101000 Sobic001G460100 Sobic001G460100 Sobic003G179000--Sobic001G460100 Sobic009G052600 Sobic009G052600 Sobic003G179000--Sobic009G052600 Sobic006G157100 Sobic006G157100 Sobic003G179000--Sobic006G157100 Sobic001G397000 Sobic001G397000 Sobic003G179000--Sobic001G397000 Sobic007G134800--Sobic001G397000 Sobic003G300900 Sobic003G300900 Sobic007G134800--Sobic003G300900 Sobic001G410200 Sobic001G410200 Sobic007G134800--Sobic001G410200 Sobic007G134800--Sobic002G101000 Sobic007G134800--Sobic007G112100 Sobic007G134800--Sobic003G179000 Sobic007G029400 Sobic007G029400 Sobic007G134800--Sobic007G029400 Sobic001G336050 Sobic001G336050 Sobic007G134800--Sobic001G336050 Sobic007G079600 Sobic007G079600 Sobic007G134800--Sobic007G079600 Sobic001G481700 Sobic001G481700 Sobic007G220900--Sobic001G481700 Sobic007G220900--Sobic002G101000 Sobic010G100000 Sobic010G100000 Sobic007G220900--Sobic010G100000 Sobic001G513500 Sobic001G513500 Sobic007G220900--Sobic001G513500 Sobic009G104100 Sobic009G104100 Sobic007G220900--Sobic009G104100 Sobic009G179100 Sobic009G179100 Sobic007G220900--Sobic009G179100 Sobic008G094600 Sobic008G094600 Sobic007G220900--Sobic008G094600 Sobic001G025600 Sobic001G025600 Sobic007G220900--Sobic001G025600 Sobic001G030300 Sobic001G030300 Sobic007G220900--Sobic001G030300 Sobic009G109300 Sobic009G109300 Sobic007G112100--Sobic009G109300 Sobic001G532800 Sobic001G532800 Sobic007G112100--Sobic001G532800 Sobic004G032900 Sobic004G032900 Sobic007G112100--Sobic004G032900 Sobic002G158500 Sobic002G158500 Sobic007G112100--Sobic002G158500 Sobic002G236700 Sobic002G236700 Sobic007G112100--Sobic002G236700 Sobic006G120600 Sobic006G120600 Sobic007G112100--Sobic006G120600 Sobic001G140700 Sobic001G140700 Sobic007G112100--Sobic001G140700 Sobic007G112100--Sobic002G304400 Sobic007G112100--Sobic007G079600 Sobic001G413100 Sobic001G413100 Sobic002G304400--Sobic001G413100 Sobic008G118300 Sobic008G118300 Sobic002G304400--Sobic008G118300 Sobic004G069400 Sobic004G069400 Sobic002G304400--Sobic004G069400 Sobic002G304400--Sobic007G112100 Sobic001G286100 Sobic001G286100 Sobic002G304400--Sobic001G286100 Sobic001G167500 Sobic001G167500 Sobic002G304400--Sobic001G167500 Sobic002G304400--Sobic001G336050 Sobic001G521100 Sobic001G521100 Sobic002G304400--Sobic001G521100 Sobic001G081900 Sobic001G081900 Sobic002G304400--Sobic001G081900 Sobic002G101000--Sobic009G104100 Sobic002G101000--Sobic007G220900 Sobic002G101000--Sobic007G029400 Sobic002G101000--Sobic009G179100 Sobic005G050500 Sobic005G050500 Sobic002G101000--Sobic005G050500 Sobic009G101700 Sobic009G101700 Sobic002G101000--Sobic009G101700 Sobic002G054000 Sobic002G054000 Sobic002G101000--Sobic002G054000 Sobic004G342400 Sobic004G342400 Sobic002G101000--Sobic004G342400 Sobic004G349700 Sobic004G349700 Sobic002G101000--Sobic004G349700 Sobic010G177100 Sobic010G177100 Sobic001G460100--Sobic010G177100 Sobic009G188900 Sobic009G188900 Sobic001G460100--Sobic009G188900 Sobic009G113900 Sobic009G113900 Sobic001G460100--Sobic009G113900 Sobic003G084200 Sobic003G084200 Sobic001G460100--Sobic003G084200 Sobic009G012600 Sobic009G012600 Sobic001G460100--Sobic009G012600 Sobic003G024000 Sobic003G024000 Sobic001G460100--Sobic003G024000 Sobic007G050800 Sobic007G050800 Sobic001G460100--Sobic007G050800 Sobic006G275500 Sobic006G275500 Sobic001G460100--Sobic006G275500 Sobic003G102700 Sobic003G102700 Sobic001G460100--Sobic003G102700 Sobic004G347500 Sobic004G347500 Sobic009G052600--Sobic004G347500 Sobic010G024600 Sobic010G024600 Sobic009G052600--Sobic010G024600 Sobic003G098300 Sobic003G098300 Sobic009G052600--Sobic003G098300 Sobic001G386600 Sobic001G386600 Sobic009G052600--Sobic001G386600 Sobic005G021000 Sobic005G021000 Sobic009G052600--Sobic005G021000 Sobic007G053100 Sobic007G053100 Sobic009G052600--Sobic007G053100 Sobic001G261420 Sobic001G261420 Sobic009G052600--Sobic001G261420 Sobic002G177600 Sobic002G177600 Sobic009G052600--Sobic002G177600 Sobic003G011800 Sobic003G011800 Sobic009G052600--Sobic003G011800 Sobic001G530100 Sobic001G530100 Sobic006G157100--Sobic001G530100 Sobic008G059900 Sobic008G059900 Sobic006G157100--Sobic008G059900 Sobic010G197200 Sobic010G197200 Sobic006G157100--Sobic010G197200 Sobic006G157100--Sobic003G179000 Sobic004G253500 Sobic004G253500 Sobic006G157100--Sobic004G253500 Sobic003G148400 Sobic003G148400 Sobic006G157100--Sobic003G148400 Sobic006G157100--Sobic007G079600 Sobic004G129100 Sobic004G129100 Sobic006G157100--Sobic004G129100 Sobic006G157100--Sobic007G112100 Sobic001G371100 Sobic001G371100 Sobic001G397000--Sobic001G371100 Sobic001G397000--Sobic003G300900 Sobic003G396600 Sobic003G396600 Sobic001G397000--Sobic003G396600 Sobic001G397000--Sobic007G134800 Sobic010G144900 Sobic010G144900 Sobic001G397000--Sobic010G144900 Sobic008G100700 Sobic008G100700 Sobic001G397000--Sobic008G100700 Sobic001G397000--Sobic001G081900 Sobic001G397000--Sobic002G101000 Sobic001G228200 Sobic001G228200 Sobic001G397000--Sobic001G228200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.