Gene annotation
Transcriptome id Sobic.002G341300.5,Sobic.002G341300.3,Sobic.002G341300.7,Sobic.002G341300.1,Sobic.002G341300.4,Sobic.002G341300.6
Synonym Sb02g036550
Functional annotation expressed protein
UniProt C5XBM1
Pfam -
Panther DB PTHR33728 PTHR33728:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G11120 : -
RAP-DB (Rice) LOC_Os07g37820.1 : expressed protein
MaizeGDB (Corn) Zm00025a048410 , Zm00025a014932
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G341300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G012600 RPA1C - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
2 Sobic.010G177100 expressed protein -
3 Sobic.004G033200 expressed protein -
4 Sobic.001G456400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@protein of unknown function DUF1675 domain containing protein, expressed -
5 Sobic.009G052600 universal stress protein domain containing protein, putative, expressed -
6 Sobic.007G053100 amino acid permease family protein, putative, expressed -
7 Sobic.001G296700 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
8 Sobic.003G084200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.009G233000 homeobox domain containing protein, expressed -
10 Sobic.004G207766 - -
11 Sobic.009G028100 dnaJ domain containing protein, expressed K09510: DnaJ homolog subfamily B member 4
12 Sobic.003G350400 thaumatin, putative, expressed -
13 Sobic.008G191850 - -
14 Sobic.006G251500 inositol 1,3,4,5,6-pentakisphosphate 2-kinase, putative, expressed K10572: inositol-pentakisphosphate 2-kinase
15 Sobic.001G375800 expressed protein -
16 Sobic.006G226000 expressed protein -
17 Sobic.004G347500 2-phosphoglycerate kinase-related, putative, expressed -
18 Sobic.004G242200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@nucleobase-ascorbate transporter, putative, expressed -
19 Sobic.010G024600 aminomethyltransferase, putative, expressed K06980: tRNA-modifying protein YgfZ
20 Sobic.007G194500 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e


Gene co-expression network
sample Sobic002G341300 Sobic002G341300 Sobic009G012600 Sobic009G012600 Sobic002G341300--Sobic009G012600 Sobic010G177100 Sobic010G177100 Sobic002G341300--Sobic010G177100 Sobic004G033200 Sobic004G033200 Sobic002G341300--Sobic004G033200 Sobic001G456400 Sobic001G456400 Sobic002G341300--Sobic001G456400 Sobic009G052600 Sobic009G052600 Sobic002G341300--Sobic009G052600 Sobic007G053100 Sobic007G053100 Sobic002G341300--Sobic007G053100 Sobic001G296700 Sobic001G296700 Sobic002G341300--Sobic001G296700 Sobic003G084200 Sobic003G084200 Sobic002G341300--Sobic003G084200 Sobic009G233000 Sobic009G233000 Sobic002G341300--Sobic009G233000 Sobic007G050800 Sobic007G050800 Sobic009G012600--Sobic007G050800 Sobic005G045700 Sobic005G045700 Sobic009G012600--Sobic005G045700 Sobic006G226000 Sobic006G226000 Sobic009G012600--Sobic006G226000 Sobic007G192200 Sobic007G192200 Sobic009G012600--Sobic007G192200 Sobic009G002200 Sobic009G002200 Sobic009G012600--Sobic009G002200 Sobic005G036200 Sobic005G036200 Sobic009G012600--Sobic005G036200 Sobic010G037901 Sobic010G037901 Sobic009G012600--Sobic010G037901 Sobic006G262501 Sobic006G262501 Sobic009G012600--Sobic006G262501 Sobic008G191850 Sobic008G191850 Sobic009G012600--Sobic008G191850 Sobic001G460100 Sobic001G460100 Sobic010G177100--Sobic001G460100 Sobic003G259300 Sobic003G259300 Sobic010G177100--Sobic003G259300 Sobic010G079100 Sobic010G079100 Sobic010G177100--Sobic010G079100 Sobic003G024000 Sobic003G024000 Sobic010G177100--Sobic003G024000 Sobic005G157300 Sobic005G157300 Sobic010G177100--Sobic005G157300 Sobic001G425700 Sobic001G425700 Sobic010G177100--Sobic001G425700 Sobic010G177100--Sobic007G050800 Sobic003G412800 Sobic003G412800 Sobic010G177100--Sobic003G412800 Sobic009G225500 Sobic009G225500 Sobic010G177100--Sobic009G225500 Sobic002G266300 Sobic002G266300 Sobic004G033200--Sobic002G266300 Sobic004G033200--Sobic007G053100 Sobic004G033200--Sobic008G191850 Sobic010G024600 Sobic010G024600 Sobic004G033200--Sobic010G024600 Sobic004G066500 Sobic004G066500 Sobic004G033200--Sobic004G066500 Sobic001G508200 Sobic001G508200 Sobic004G033200--Sobic001G508200 Sobic004G033200--Sobic009G052600 Sobic008G116600 Sobic008G116600 Sobic004G033200--Sobic008G116600 Sobic004G347500 Sobic004G347500 Sobic004G033200--Sobic004G347500 Sobic004G242200 Sobic004G242200 Sobic001G456400--Sobic004G242200 Sobic001G456400--Sobic005G036200 Sobic001G375800 Sobic001G375800 Sobic001G456400--Sobic001G375800 Sobic001G456400--Sobic009G002200 Sobic002G420400 Sobic002G420400 Sobic001G456400--Sobic002G420400 Sobic010G152000 Sobic010G152000 Sobic001G456400--Sobic010G152000 Sobic001G456400--Sobic003G084200 Sobic001G456400--Sobic009G233000 Sobic003G379900 Sobic003G379900 Sobic001G456400--Sobic003G379900 Sobic009G052600--Sobic004G347500 Sobic009G052600--Sobic010G024600 Sobic003G098300 Sobic003G098300 Sobic009G052600--Sobic003G098300 Sobic001G386600 Sobic001G386600 Sobic009G052600--Sobic001G386600 Sobic005G021000 Sobic005G021000 Sobic009G052600--Sobic005G021000 Sobic009G052600--Sobic007G053100 Sobic001G261420 Sobic001G261420 Sobic009G052600--Sobic001G261420 Sobic002G177600 Sobic002G177600 Sobic009G052600--Sobic002G177600 Sobic003G011800 Sobic003G011800 Sobic009G052600--Sobic003G011800 Sobic007G053100--Sobic002G266300 Sobic006G251500 Sobic006G251500 Sobic007G053100--Sobic006G251500 Sobic006G053200 Sobic006G053200 Sobic007G053100--Sobic006G053200 Sobic001G125400 Sobic001G125400 Sobic007G053100--Sobic001G125400 Sobic007G053100--Sobic005G045700 Sobic007G053100--Sobic004G033200 Sobic003G427300 Sobic003G427300 Sobic007G053100--Sobic003G427300 Sobic007G053100--Sobic004G066500 Sobic002G127900 Sobic002G127900 Sobic007G053100--Sobic002G127900 Sobic008G075350 Sobic008G075350 Sobic001G296700--Sobic008G075350 Sobic005G139150 Sobic005G139150 Sobic001G296700--Sobic005G139150 Sobic001G197800 Sobic001G197800 Sobic001G296700--Sobic001G197800 Sobic001G296700--Sobic001G386600 Sobic001G296700--Sobic009G052600 Sobic001G296700--Sobic001G261420 Sobic002G204350 Sobic002G204350 Sobic001G296700--Sobic002G204350 Sobic009G230000 Sobic009G230000 Sobic001G296700--Sobic009G230000 Sobic002G350000 Sobic002G350000 Sobic001G296700--Sobic002G350000 Sobic001G104500 Sobic001G104500 Sobic003G084200--Sobic001G104500 Sobic003G084200--Sobic007G050800 Sobic006G275500 Sobic006G275500 Sobic003G084200--Sobic006G275500 Sobic003G084200--Sobic005G157300 Sobic002G168000 Sobic002G168000 Sobic003G084200--Sobic002G168000 Sobic007G187700 Sobic007G187700 Sobic003G084200--Sobic007G187700 Sobic003G244000 Sobic003G244000 Sobic003G084200--Sobic003G244000 Sobic003G084200--Sobic009G002200 Sobic003G084200--Sobic001G456400 Sobic003G295600 Sobic003G295600 Sobic009G233000--Sobic003G295600 Sobic004G301800 Sobic004G301800 Sobic009G233000--Sobic004G301800 Sobic003G283700 Sobic003G283700 Sobic009G233000--Sobic003G283700 Sobic003G236200 Sobic003G236200 Sobic009G233000--Sobic003G236200 Sobic002G391100 Sobic002G391100 Sobic009G233000--Sobic002G391100 Sobic003G098800 Sobic003G098800 Sobic009G233000--Sobic003G098800 Sobic010G142900 Sobic010G142900 Sobic009G233000--Sobic010G142900 Sobic001G380800 Sobic001G380800 Sobic009G233000--Sobic001G380800 Sobic002G118300 Sobic002G118300 Sobic009G233000--Sobic002G118300
Octagon: transcription factors


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