Gene annotation
Transcriptome id Sobic.001G296700.1
Synonym HTA5, G-H2AX, Sb01g028960, GAMMA-H2AX, H2AXA
Functional annotation Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
UniProt C5WRI8
Pfam PF00125 PF16211
Panther DB PTHR23430
NCBI CDD KOG1756; Histone 2A
KEGG Orthology K11251; histone H2A
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT1G08880 : Histone superfamily protein
RAP-DB (Rice) LOC_Os12g34510.1 : Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a054387 , Zm00025a040905
Brachypodium KQJ86512 , KQK13476
Barley HORVU6Hr1G092390.1 , HORVU6Hr1G092280.1 , HORVU6Hr1G092280.2 , HORVU2Hr1G043860.2 , HORVU2Hr1G043860.1
Wheat -
Populus -


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cDNA sequences
Sobic.001G296700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G075350 - -
2 Sobic.005G139150 - -
3 Sobic.001G197800 - -
4 Sobic.001G386600 homeobox domain containing protein, expressed -
5 Sobic.009G052600 universal stress protein domain containing protein, putative, expressed -
6 Sobic.001G261420 - -
7 Sobic.002G204350 - -
8 Sobic.009G230000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@transcription factor HBP-1b, putative, expressed -
9 Sobic.002G350000 ubiquitin-like protein SMT3, putative, expressed K12160: SUMO, small ubiquitin-related modifier
10 Sobic.002G341300 expressed protein -
11 Sobic.002G049900 - -
12 Sobic.004G347500 2-phosphoglycerate kinase-related, putative, expressed -
13 Sobic.007G153600 similar to Protein HVA22(PubMedID : 29862293)@HVA22, putative, expressed K17279: receptor expression-enhancing protein 5/6
14 Sobic.010G090100 phosphoglycerate mutase, putative, expressed K01834: PGAM, 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
15 Sobic.002G256900 acyl-ACP thioesterase, putative, expressed K10782: fatty acyl-ACP thioesterase A
16 Sobic.003G400400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cysteine proteinase inhibitor precursor protein, putative, expressed -
17 Sobic.003G395000 cysteine proteinase EP-B 1 precursor, putative, expressed -
18 Sobic.006G055900 expressed protein -
19 Sobic.005G021000 AP2 domain containing protein, expressed K09285: OVM, AP2-like factor, ANT lineage
20 Sobic.006G217800 helix-loop-helix DNA-binding domain containing protein, expressed -


Gene co-expression network
sample Sobic001G296700 Sobic001G296700 Sobic008G075350 Sobic008G075350 Sobic001G296700--Sobic008G075350 Sobic005G139150 Sobic005G139150 Sobic001G296700--Sobic005G139150 Sobic001G197800 Sobic001G197800 Sobic001G296700--Sobic001G197800 Sobic001G386600 Sobic001G386600 Sobic001G296700--Sobic001G386600 Sobic009G052600 Sobic009G052600 Sobic001G296700--Sobic009G052600 Sobic001G261420 Sobic001G261420 Sobic001G296700--Sobic001G261420 Sobic002G204350 Sobic002G204350 Sobic001G296700--Sobic002G204350 Sobic009G230000 Sobic009G230000 Sobic001G296700--Sobic009G230000 Sobic002G350000 Sobic002G350000 Sobic001G296700--Sobic002G350000 Sobic008G075350--Sobic005G139150 Sobic008G075350--Sobic001G386600 Sobic008G075350--Sobic001G261420 Sobic008G075350--Sobic002G204350 Sobic001G298032 Sobic001G298032 Sobic008G075350--Sobic001G298032 Sobic007G191500 Sobic007G191500 Sobic008G075350--Sobic007G191500 Sobic001G122600 Sobic001G122600 Sobic008G075350--Sobic001G122600 Sobic005G139150--Sobic008G075350 Sobic005G139150--Sobic001G261420 Sobic005G139150--Sobic001G386600 Sobic005G139150--Sobic002G204350 Sobic005G139150--Sobic001G298032 Sobic010G053400 Sobic010G053400 Sobic005G139150--Sobic010G053400 Sobic005G139150--Sobic001G122600 Sobic001G197800--Sobic008G075350 Sobic001G197800--Sobic001G386600 Sobic010G090100 Sobic010G090100 Sobic001G197800--Sobic010G090100 Sobic003G019400 Sobic003G019400 Sobic001G197800--Sobic003G019400 Sobic008G170500 Sobic008G170500 Sobic001G197800--Sobic008G170500 Sobic004G347500 Sobic004G347500 Sobic001G197800--Sobic004G347500 Sobic001G197800--Sobic001G296700 Sobic006G013300 Sobic006G013300 Sobic001G197800--Sobic006G013300 Sobic002G232900 Sobic002G232900 Sobic001G197800--Sobic002G232900 Sobic001G386600--Sobic001G261420 Sobic001G386600--Sobic008G075350 Sobic001G386600--Sobic007G191500 Sobic001G386600--Sobic002G204350 Sobic001G004600 Sobic001G004600 Sobic001G386600--Sobic001G004600 Sobic005G021000 Sobic005G021000 Sobic001G386600--Sobic005G021000 Sobic001G386600--Sobic004G347500 Sobic001G165600 Sobic001G165600 Sobic001G386600--Sobic001G165600 Sobic001G386600--Sobic001G122600 Sobic009G052600--Sobic004G347500 Sobic010G024600 Sobic010G024600 Sobic009G052600--Sobic010G024600 Sobic003G098300 Sobic003G098300 Sobic009G052600--Sobic003G098300 Sobic009G052600--Sobic001G386600 Sobic009G052600--Sobic005G021000 Sobic007G053100 Sobic007G053100 Sobic009G052600--Sobic007G053100 Sobic009G052600--Sobic001G261420 Sobic002G177600 Sobic002G177600 Sobic009G052600--Sobic002G177600 Sobic003G011800 Sobic003G011800 Sobic009G052600--Sobic003G011800 Sobic001G261420--Sobic002G204350 Sobic001G261420--Sobic007G191500 Sobic001G261420--Sobic001G122600 Sobic002G204350--Sobic001G122600 Sobic006G217800 Sobic006G217800 Sobic009G230000--Sobic006G217800 Sobic003G443400 Sobic003G443400 Sobic009G230000--Sobic003G443400 Sobic009G230000--Sobic007G191500 Sobic001G463600 Sobic001G463600 Sobic009G230000--Sobic001G463600 Sobic008G159000 Sobic008G159000 Sobic009G230000--Sobic008G159000 Sobic001G166900 Sobic001G166900 Sobic009G230000--Sobic001G166900 Sobic002G197700 Sobic002G197700 Sobic009G230000--Sobic002G197700 Sobic010G125000 Sobic010G125000 Sobic009G230000--Sobic010G125000 Sobic002G211300 Sobic002G211300 Sobic009G230000--Sobic002G211300 Sobic002G049900 Sobic002G049900 Sobic002G350000--Sobic002G049900 Sobic002G350000--Sobic002G204350 Sobic002G350000--Sobic001G122600
Octagon: transcription factors


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