Gene annotation
Transcriptome id Sobic.009G233000.1
Synonym Sb09g028562, WOX9, STIP, HB-3
Functional annotation homeobox domain containing protein, expressed
UniProt A0A1B6PA40
Pfam PF00046
Panther DB PTHR24326 PTHR24326:SF274
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT2G33880 : homeobox-3
RAP-DB (Rice) LOC_Os05g48990.1 : homeobox domain containing protein, expressed
MaizeGDB (Corn) Zm00025a049196 , Zm00025a038759 , Zm00025a054984 , Zm00025a028123 , Zm00025a044576 , Zm00025a052470 , Zm00025a002274
Brachypodium KQJ95743 , KQK14583 , KQK04862 , KQK21876 , KQK09100
Barley HORVU3Hr1G060950.1 , HORVU3Hr1G060950.3 , HORVU3Hr1G060950.2 , HORVU1Hr1G087950.1 , HORVU1Hr1G087950.2 , HORVU1Hr1G087940.1 , HORVU2Hr1G017270.9 , HORVU2Hr1G017270.8 , HORVU2Hr1G017270.3 , HORVU2Hr1G017270.2 , HORVU2Hr1G017270.1 , HORVU2Hr1G017270.7 , HORVU2Hr1G017270.6 , HORVU2Hr1G017270.5 , HORVU2Hr1G017270.4
Wheat TraesCS4B02G174400 , TraesCS1D02G406900 , TraesCS3B02G272200 , TraesCS2B02G117900 , TraesCS1B02G427400 , TraesCS3D02G244300 , TraesCS1A02G399400 , TraesCS4D02G176400 , TraesCS2A02G100700 , TraesCS4A02G130200 , TraesCS2D02G100200 , TraesCS3A02G247200
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G295600 DUF1264 domain containing protein, putative, expressed -
2 Sobic.004G301800 vacuolar-processing enzyme precursor, putative, expressed K01369: legumain
3 Sobic.003G283700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@DUF1264 domain containing protein, putative, expressed -
4 Sobic.003G236200 oleosin, putative, expressed -
5 Sobic.002G391100 Thioredoxin peroxidase (Os)(PubMedID : 27208977)@peroxiredoxin, putative, expressed K11188: peroxiredoxin 6
6 Sobic.003G098800 osMFT2 MFT-Like2 homologous to Mother of FT and TFL1 gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed -
7 Sobic.010G142900 oleosin, putative, expressed -
8 Sobic.001G380800 cupin domain containing protein, expressed -
9 Sobic.002G118300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@AWPM-19-like membrane family protein, putative, expressed -
10 Sobic.004G281700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@DUF1264 domain containing protein, putative, expressed -
11 Sobic.001G418500 glyoxalase family protein, putative, expressed -
12 Sobic.001G017500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed -
13 Sobic.003G437400 The major cationic peroxidase in sorghum grain (SPC4)(PubMedID : 16650004)@peroxidase precursor, putative, expressed K00430: peroxidase
14 Sobic.001G544400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@oleosin, putative, expressed -
15 Sobic.002G393100 dehydrogenase/reductase, putative, expressed -
16 Sobic.003G399500 OsFBX59 - F-box domain containing protein, expressed -
17 Sobic.001G126900 oleosin, putative, expressed -
18 Sobic.010G131500 -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed -
19 Sobic.002G401400 glyoxalase family protein, putative, expressed -
20 Sobic.003G051400 cytochrome c oxidase polypeptide Vc, putative, expressed -


Gene co-expression network
sample Sobic009G233000 Sobic009G233000 Sobic003G295600 Sobic003G295600 Sobic009G233000--Sobic003G295600 Sobic004G301800 Sobic004G301800 Sobic009G233000--Sobic004G301800 Sobic003G283700 Sobic003G283700 Sobic009G233000--Sobic003G283700 Sobic003G236200 Sobic003G236200 Sobic009G233000--Sobic003G236200 Sobic002G391100 Sobic002G391100 Sobic009G233000--Sobic002G391100 Sobic003G098800 Sobic003G098800 Sobic009G233000--Sobic003G098800 Sobic010G142900 Sobic010G142900 Sobic009G233000--Sobic010G142900 Sobic001G380800 Sobic001G380800 Sobic009G233000--Sobic001G380800 Sobic002G118300 Sobic002G118300 Sobic009G233000--Sobic002G118300 Sobic003G295600--Sobic003G283700 Sobic003G295600--Sobic010G142900 Sobic003G295600--Sobic004G301800 Sobic003G295600--Sobic001G380800 Sobic003G295600--Sobic003G098800 Sobic001G418500 Sobic001G418500 Sobic003G295600--Sobic001G418500 Sobic004G281700 Sobic004G281700 Sobic003G295600--Sobic004G281700 Sobic001G126900 Sobic001G126900 Sobic003G295600--Sobic001G126900 Sobic003G295600--Sobic002G391100 Sobic004G301800--Sobic001G380800 Sobic004G301800--Sobic010G142900 Sobic004G301800--Sobic003G295600 Sobic004G301800--Sobic001G418500 Sobic004G301800--Sobic004G281700 Sobic004G301800--Sobic003G283700 Sobic004G301800--Sobic003G098800 Sobic002G401400 Sobic002G401400 Sobic004G301800--Sobic002G401400 Sobic003G437400 Sobic003G437400 Sobic004G301800--Sobic003G437400 Sobic003G283700--Sobic003G295600 Sobic003G283700--Sobic002G391100 Sobic003G283700--Sobic003G236200 Sobic003G283700--Sobic004G281700 Sobic003G283700--Sobic004G301800 Sobic003G283700--Sobic003G098800 Sobic003G283700--Sobic010G142900 Sobic003G283700--Sobic001G380800 Sobic001G017500 Sobic001G017500 Sobic003G283700--Sobic001G017500 Sobic003G236200--Sobic002G391100 Sobic003G236200--Sobic003G283700 Sobic003G236200--Sobic002G118300 Sobic003G236200--Sobic003G295600 Sobic003G236200--Sobic001G017500 Sobic003G236200--Sobic003G098800 Sobic003G236200--Sobic004G281700 Sobic003G236200--Sobic004G301800 Sobic003G236200--Sobic010G142900 Sobic002G391100--Sobic003G283700 Sobic002G391100--Sobic001G017500 Sobic002G391100--Sobic003G236200 Sobic002G391100--Sobic003G098800 Sobic002G391100--Sobic003G295600 Sobic002G391100--Sobic002G118300 Sobic002G391100--Sobic004G301800 Sobic002G391100--Sobic004G281700 Sobic007G162700 Sobic007G162700 Sobic002G391100--Sobic007G162700 Sobic003G098800--Sobic003G437400 Sobic010G131500 Sobic010G131500 Sobic003G098800--Sobic010G131500 Sobic003G098800--Sobic003G295600 Sobic003G098800--Sobic001G380800 Sobic003G098800--Sobic003G283700 Sobic003G098800--Sobic004G301800 Sobic003G098800--Sobic002G391100 Sobic003G051400 Sobic003G051400 Sobic003G098800--Sobic003G051400 Sobic003G098800--Sobic010G142900 Sobic010G142900--Sobic001G418500 Sobic010G142900--Sobic001G380800 Sobic010G142900--Sobic003G295600 Sobic010G142900--Sobic004G301800 Sobic010G142900--Sobic001G126900 Sobic010G142900--Sobic002G401400 Sobic003G144500 Sobic003G144500 Sobic010G142900--Sobic003G144500 Sobic010G142900--Sobic003G283700 Sobic001G544400 Sobic001G544400 Sobic010G142900--Sobic001G544400 Sobic001G380800--Sobic004G301800 Sobic001G380800--Sobic010G142900 Sobic001G380800--Sobic003G295600 Sobic001G380800--Sobic001G418500 Sobic001G380800--Sobic003G437400 Sobic001G380800--Sobic002G401400 Sobic001G380800--Sobic001G126900 Sobic002G393100 Sobic002G393100 Sobic001G380800--Sobic002G393100 Sobic001G380800--Sobic003G098800 Sobic002G118300--Sobic001G017500 Sobic002G118300--Sobic003G236200 Sobic002G118300--Sobic002G391100 Sobic002G118300--Sobic003G283700 Sobic002G118300--Sobic003G295600 Sobic002G118300--Sobic004G281700 Sobic002G118300--Sobic004G301800 Sobic007G075250 Sobic007G075250 Sobic002G118300--Sobic007G075250 Sobic002G118300--Sobic010G142900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.