Gene annotation
Transcriptome id Sobic.003G011800.1
Synonym PANB2, Sb03g001200
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
3-methyl-2-oxobutanoate hydroxymethyltransferase, putative, expressed
UniProt C5XKA9
Pfam PF02548
Panther DB PTHR20881 PTHR20881:SF0
NCBI CDD KOG2949; Ketopantoate hydroxymethyltransferase
KEGG Orthology K00606; 3-methyl-2-oxobutanoate hydroxymethyltransferase
Gene Ontology GO:0015940; pantothenate biosynthetic process GO:00038643-methyl-2-oxobutanoate hydroxymethyltransferase activity


Orthologs (automatic annotation)
TAIR AT3G61530 : Phosphoenolpyruvate carboxylase family protein
RAP-DB (Rice) LOC_Os01g12560.1 : 3-methyl-2-oxobutanoate hydroxymethyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a035959
Brachypodium KQK03374
Barley HORVU3Hr1G030620.4 , HORVU3Hr1G030620.6 , HORVU3Hr1G030620.7 , HORVU3Hr1G030620.5 , HORVU3Hr1G030620.2 , HORVU3Hr1G030620.3 , HORVU3Hr1G030620.1 , HORVU3Hr1G030620.8
Wheat TraesCS3B02G177600 , TraesCS3A02G150600 , TraesCS3D02G158500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G386600 homeobox domain containing protein, expressed -
2 Sobic.001G261420 - -
3 Sobic.004G347500 2-phosphoglycerate kinase-related, putative, expressed -
4 Sobic.005G021000 AP2 domain containing protein, expressed K09285: OVM, AP2-like factor, ANT lineage
5 Sobic.003G443400 glycerol-3-phosphate dehydrogenase, putative, expressed K00006: glycerol-3-phosphate dehydrogenase (NAD+)
6 Sobic.006G095900 OsSCP60 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
7 Sobic.007G191500 - -
8 Sobic.001G254800 cytochrome P450, putative, expressed -
9 Sobic.001G004600 expressed protein -
10 Sobic.009G103800 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@ABA signaling component(PubMedID : 24151305)@AP2 domain containing protein, expressed K09286: EREBP-like factor
11 Sobic.001G344300 - -
12 Sobic.004G349550 - K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
13 Sobic.007G025600 amino acid transporter, putative, expressed -
14 Sobic.002G184700 expressed protein -
15 Sobic.002G046000 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
16 Sobic.006G167700 oleosin, putative, expressed -
17 Sobic.004G091600 ethylene receptor, putative, expressed K14509: ETR, ethylene receptor
18 Sobic.006G217800 helix-loop-helix DNA-binding domain containing protein, expressed -
19 Sobic.005G184700 - -
20 Sobic.001G122600 expressed protein -


Gene co-expression network
sample Sobic003G011800 Sobic003G011800 Sobic001G386600 Sobic001G386600 Sobic003G011800--Sobic001G386600 Sobic001G261420 Sobic001G261420 Sobic003G011800--Sobic001G261420 Sobic004G347500 Sobic004G347500 Sobic003G011800--Sobic004G347500 Sobic005G021000 Sobic005G021000 Sobic003G011800--Sobic005G021000 Sobic003G443400 Sobic003G443400 Sobic003G011800--Sobic003G443400 Sobic006G095900 Sobic006G095900 Sobic003G011800--Sobic006G095900 Sobic007G191500 Sobic007G191500 Sobic003G011800--Sobic007G191500 Sobic001G254800 Sobic001G254800 Sobic003G011800--Sobic001G254800 Sobic001G004600 Sobic001G004600 Sobic003G011800--Sobic001G004600 Sobic001G386600--Sobic001G261420 Sobic008G075350 Sobic008G075350 Sobic001G386600--Sobic008G075350 Sobic001G386600--Sobic007G191500 Sobic002G204350 Sobic002G204350 Sobic001G386600--Sobic002G204350 Sobic001G386600--Sobic001G004600 Sobic001G386600--Sobic005G021000 Sobic001G386600--Sobic004G347500 Sobic001G165600 Sobic001G165600 Sobic001G386600--Sobic001G165600 Sobic001G122600 Sobic001G122600 Sobic001G386600--Sobic001G122600 Sobic001G261420--Sobic002G204350 Sobic001G261420--Sobic007G191500 Sobic001G261420--Sobic001G122600 Sobic004G347500--Sobic005G021000 Sobic002G177600 Sobic002G177600 Sobic004G347500--Sobic002G177600 Sobic002G240000 Sobic002G240000 Sobic004G347500--Sobic002G240000 Sobic004G347500--Sobic001G004600 Sobic001G534200 Sobic001G534200 Sobic004G347500--Sobic001G534200 Sobic002G232900 Sobic002G232900 Sobic004G347500--Sobic002G232900 Sobic004G347500--Sobic007G191500 Sobic006G217800 Sobic006G217800 Sobic004G347500--Sobic006G217800 Sobic004G347500--Sobic001G386600 Sobic005G021000--Sobic001G254800 Sobic005G021000--Sobic006G217800 Sobic005G021000--Sobic003G443400 Sobic007G025600 Sobic007G025600 Sobic005G021000--Sobic007G025600 Sobic008G149300 Sobic008G149300 Sobic005G021000--Sobic008G149300 Sobic005G021000--Sobic001G534200 Sobic009G103800 Sobic009G103800 Sobic005G021000--Sobic009G103800 Sobic006G167700 Sobic006G167700 Sobic005G021000--Sobic006G167700 Sobic001G166900 Sobic001G166900 Sobic005G021000--Sobic001G166900 Sobic003G443400--Sobic006G217800 Sobic001G393101 Sobic001G393101 Sobic003G443400--Sobic001G393101 Sobic004G349550 Sobic004G349550 Sobic003G443400--Sobic004G349550 Sobic003G443400--Sobic008G149300 Sobic003G443400--Sobic009G103800 Sobic003G443400--Sobic006G167700 Sobic003G443400--Sobic001G166900 Sobic001G344300 Sobic001G344300 Sobic003G443400--Sobic001G344300 Sobic005G184700 Sobic005G184700 Sobic003G443400--Sobic005G184700 Sobic006G095900--Sobic004G349550 Sobic006G095900--Sobic005G184700 Sobic006G095900--Sobic001G165600 Sobic006G095900--Sobic008G149300 Sobic005G184800 Sobic005G184800 Sobic006G095900--Sobic005G184800 Sobic009G246250 Sobic009G246250 Sobic006G095900--Sobic009G246250 Sobic006G095900--Sobic001G122600 Sobic007G191500--Sobic001G261420 Sobic007G191500--Sobic001G122600 Sobic001G254800--Sobic007G025600 Sobic001G254800--Sobic009G103800 Sobic001G254800--Sobic006G167700 Sobic002G184700 Sobic002G184700 Sobic001G254800--Sobic002G184700 Sobic001G254800--Sobic001G344300 Sobic001G254800--Sobic004G349550 Sobic001G254800--Sobic001G534200 Sobic010G198900 Sobic010G198900 Sobic001G254800--Sobic010G198900 Sobic001G254800--Sobic001G166900 Sobic009G025500 Sobic009G025500 Sobic001G004600--Sobic009G025500 Sobic001G004600--Sobic001G261420 Sobic001G004600--Sobic001G165600 Sobic001G004600--Sobic001G122600
Octagon: transcription factors


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