Gene annotation
Transcriptome id Sobic.004G248300.1
Synonym Sb04g028810
Functional annotation dynein light chain type 1 domain containing protein, expressed
UniProt C5XZB2
Pfam PF01221
Panther DB PTHR11886 PTHR11886:SF50
NCBI CDD KOG3430; Dynein light chain type 1
KEGG Orthology K10418; dynein light chain LC8-type
Gene Ontology GO:0007017; microtubule-based process GO:0005875microtubule associated complex


Orthologs (automatic annotation)
TAIR AT1G23220 : Dynein light chain type 1 family protein
RAP-DB (Rice) LOC_Os04g38880.1 : dynein light chain type 1 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a021937 , Zm00025a032660
Brachypodium KQK01587
Barley HORVU6Hr1G073600.3 , HORVU6Hr1G073600.4 , HORVU6Hr1G073600.7
Wheat TraesCS6D02G275800 , TraesCS6A02G295200 , TraesCS6B02G325300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G022200 harpin-induced protein 1 domain containing protein, expressed -
2 Sobic.003G409500 - -
3 Sobic.005G100500 RNA polymerase subunit, putative, expressed K03020: RPC19, DNA-directed RNA polymerases I and III subunit RPAC2
4 Sobic.006G108500 dynein light chain type 1 domain containing protein, expressed -
5 Sobic.002G294300 plastocyanin-like domain containing protein, putative, expressed -
6 Sobic.001G088400 kinesin motor domain containing protein, putative, expressed K10400: kinesin family member 15
7 Sobic.005G110562 - -
8 Sobic.004G064700 tubby, putative, expressed -
9 Sobic.003G298300 expressed protein -
10 Sobic.002G325200 harpin-induced protein 1 domain containing protein, expressed -
11 Sobic.001G221601 - -
12 Sobic.001G395600 proteins of unknown function domain containing protein, expressed -
13 Sobic.001G462300 cyclin, putative, expressed K06627: cyclin-A
14 Sobic.001G454700 expressed protein -
15 Sobic.005G030600 DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed K03013: RPB5, DNA-directed RNA polymerases I, II, and III subunit RPABC1
16 Sobic.002G181800 HOTHEAD precursor, putative, expressed K15403: ACE, fatty acid omega-hydroxy dehydrogenase
17 Sobic.004G053100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
18 Sobic.001G073400 expressed protein -
19 Sobic.001G365266 - -
20 Sobic.002G357200 - -


Gene co-expression network
sample Sobic004G248300 Sobic004G248300 Sobic001G022200 Sobic001G022200 Sobic004G248300--Sobic001G022200 Sobic003G409500 Sobic003G409500 Sobic004G248300--Sobic003G409500 Sobic005G100500 Sobic005G100500 Sobic004G248300--Sobic005G100500 Sobic006G108500 Sobic006G108500 Sobic004G248300--Sobic006G108500 Sobic002G294300 Sobic002G294300 Sobic004G248300--Sobic002G294300 Sobic001G088400 Sobic001G088400 Sobic004G248300--Sobic001G088400 Sobic005G110562 Sobic005G110562 Sobic004G248300--Sobic005G110562 Sobic004G064700 Sobic004G064700 Sobic004G248300--Sobic004G064700 Sobic003G298300 Sobic003G298300 Sobic004G248300--Sobic003G298300 Sobic001G022200--Sobic004G248300 Sobic001G022200--Sobic003G409500 Sobic001G073400 Sobic001G073400 Sobic001G022200--Sobic001G073400 Sobic002G325200 Sobic002G325200 Sobic001G022200--Sobic002G325200 Sobic005G139600 Sobic005G139600 Sobic001G022200--Sobic005G139600 Sobic001G022200--Sobic005G100500 Sobic001G395600 Sobic001G395600 Sobic001G022200--Sobic001G395600 Sobic001G022200--Sobic003G298300 Sobic001G201933 Sobic001G201933 Sobic001G022200--Sobic001G201933 Sobic003G409500--Sobic001G395600 Sobic002G157050 Sobic002G157050 Sobic003G409500--Sobic002G157050 Sobic003G409500--Sobic005G100500 Sobic010G267300 Sobic010G267300 Sobic003G409500--Sobic010G267300 Sobic003G409500--Sobic006G108500 Sobic001G171700 Sobic001G171700 Sobic003G409500--Sobic001G171700 Sobic001G465600 Sobic001G465600 Sobic003G409500--Sobic001G465600 Sobic004G157050 Sobic004G157050 Sobic003G409500--Sobic004G157050 Sobic010G002301 Sobic010G002301 Sobic003G409500--Sobic010G002301 Sobic005G100500--Sobic006G108500 Sobic005G100500--Sobic003G409500 Sobic007G107800 Sobic007G107800 Sobic005G100500--Sobic007G107800 Sobic005G100500--Sobic010G267300 Sobic005G100500--Sobic001G395600 Sobic009G218700 Sobic009G218700 Sobic005G100500--Sobic009G218700 Sobic004G015600 Sobic004G015600 Sobic005G100500--Sobic004G015600 Sobic007G113566 Sobic007G113566 Sobic005G100500--Sobic007G113566 Sobic005G100500--Sobic004G157050 Sobic005G021400 Sobic005G021400 Sobic006G108500--Sobic005G021400 Sobic006G108500--Sobic010G267300 Sobic006G108500--Sobic005G100500 Sobic006G108500--Sobic001G395600 Sobic001G450900 Sobic001G450900 Sobic006G108500--Sobic001G450900 Sobic001G454700 Sobic001G454700 Sobic006G108500--Sobic001G454700 Sobic001G462300 Sobic001G462300 Sobic006G108500--Sobic001G462300 Sobic006G108500--Sobic004G157050 Sobic003G055400 Sobic003G055400 Sobic006G108500--Sobic003G055400 Sobic004G335300 Sobic004G335300 Sobic002G294300--Sobic004G335300 Sobic002G294300--Sobic001G088400 Sobic008G093700 Sobic008G093700 Sobic002G294300--Sobic008G093700 Sobic002G294300--Sobic002G325200 Sobic001G480200 Sobic001G480200 Sobic002G294300--Sobic001G480200 Sobic007G024600 Sobic007G024600 Sobic002G294300--Sobic007G024600 Sobic001G141200 Sobic001G141200 Sobic002G294300--Sobic001G141200 Sobic007G136500 Sobic007G136500 Sobic002G294300--Sobic007G136500 Sobic005G149100 Sobic005G149100 Sobic002G294300--Sobic005G149100 Sobic007G067900 Sobic007G067900 Sobic001G088400--Sobic007G067900 Sobic002G113600 Sobic002G113600 Sobic001G088400--Sobic002G113600 Sobic004G073800 Sobic004G073800 Sobic001G088400--Sobic004G073800 Sobic009G192700 Sobic009G192700 Sobic001G088400--Sobic009G192700 Sobic006G137300 Sobic006G137300 Sobic001G088400--Sobic006G137300 Sobic010G213000 Sobic010G213000 Sobic001G088400--Sobic010G213000 Sobic001G088400--Sobic002G294300 Sobic005G164900 Sobic005G164900 Sobic001G088400--Sobic005G164900 Sobic010G158832 Sobic010G158832 Sobic001G088400--Sobic010G158832 Sobic005G110562--Sobic004G248300 Sobic009G258000 Sobic009G258000 Sobic005G110562--Sobic009G258000 Sobic008G017600 Sobic008G017600 Sobic005G110562--Sobic008G017600 Sobic001G221601 Sobic001G221601 Sobic005G110562--Sobic001G221601 Sobic005G110562--Sobic003G409500 Sobic007G043750 Sobic007G043750 Sobic005G110562--Sobic007G043750 Sobic002G109900 Sobic002G109900 Sobic005G110562--Sobic002G109900 Sobic001G088000 Sobic001G088000 Sobic005G110562--Sobic001G088000 Sobic003G432400 Sobic003G432400 Sobic005G110562--Sobic003G432400 Sobic004G312400 Sobic004G312400 Sobic004G064700--Sobic004G312400 Sobic004G064700--Sobic001G221601 Sobic004G064700--Sobic001G462300 Sobic008G106100 Sobic008G106100 Sobic004G064700--Sobic008G106100 Sobic009G195500 Sobic009G195500 Sobic004G064700--Sobic009G195500 Sobic004G064700--Sobic003G409500 Sobic004G064700--Sobic001G088400 Sobic002G164900 Sobic002G164900 Sobic004G064700--Sobic002G164900 Sobic003G016950 Sobic003G016950 Sobic004G064700--Sobic003G016950 Sobic003G298300--Sobic005G100500 Sobic003G298300--Sobic007G107800 Sobic003G298300--Sobic009G218700 Sobic003G298300--Sobic001G022200 Sobic001G021601 Sobic001G021601 Sobic003G298300--Sobic001G021601 Sobic003G383200 Sobic003G383200 Sobic003G298300--Sobic003G383200 Sobic003G298300--Sobic002G325200 Sobic003G298300--Sobic004G248300 Sobic006G206600 Sobic006G206600 Sobic003G298300--Sobic006G206600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.