Gene annotation
Transcriptome id Sobic.001G105000.3,Sobic.001G105000.4,Sobic.001G105000.1,Sobic.001G105000.2
Synonym Sb01g009380
Functional annotation basic helix-loop-helix protein, putative, expressed
UniProt C5WM06
Pfam PF00010
Panther DB PTHR12565 PTHR12565:SF175
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G68920 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os03g51910.1 : basic helix-loop-helix protein, putative, expressed
MaizeGDB (Corn) Zm00025a052981 , Zm00025a007989 , Zm00025a016889
Brachypodium KQK13409 , KQK13405 , KQK13407 , PNT74199 , PNT74200
Barley HORVU4Hr1G009970.24 , HORVU4Hr1G009970.25 , HORVU4Hr1G009970.26 , HORVU4Hr1G009970.27 , HORVU4Hr1G009970.20 , HORVU4Hr1G009970.21 , HORVU4Hr1G009970.22 , HORVU4Hr1G009970.23 , HORVU4Hr1G009970.28 , HORVU4Hr1G009970.29 , HORVU4Hr1G009970.19 , HORVU4Hr1G009970.18 , HORVU4Hr1G009970.11 , HORVU4Hr1G009970.10 , HORVU4Hr1G009970.13 , HORVU4Hr1G009970.12 , HORVU4Hr1G009970.15 , HORVU4Hr1G009970.14 , HORVU4Hr1G009970.17 , HORVU4Hr1G009970.16 , HORVU4Hr1G009970.9 , HORVU4Hr1G009970.8 , HORVU4Hr1G009970.5 , HORVU4Hr1G009970.4 , HORVU4Hr1G009970.7 , HORVU4Hr1G009970.6 , HORVU4Hr1G009970.1 , HORVU4Hr1G009970.3 , HORVU4Hr1G009970.2 , HORVU4Hr1G009970.31 , HORVU4Hr1G009970.30
Wheat TraesCS4A02G255800 , TraesCS4A02G255800 , TraesCS4A02G255800 , TraesCS4D02G058900 , TraesCS4B02G059000 , TraesCS4B02G059000
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G254700 ternary complex factor MIP1, putative, expressed -
2 Sobic.003G055400 expressed protein -
3 Sobic.002G403700 condensin complex subunit 1, putative, expressed K06677: YCS4, CNAP1, condensin complex subunit 1
4 Sobic.004G037100 cycloartenol synthase, putative, expressed K01853: cycloartenol synthase
5 Sobic.006G108500 dynein light chain type 1 domain containing protein, expressed -
6 Sobic.002G325500 ankyrin repeat family protein, putative, expressed -
7 Sobic.004G064700 tubby, putative, expressed -
8 Sobic.003G409500 - -
9 Sobic.K010100 expressed protein -
10 Sobic.007G072300 OsFBL44 - F-box domain and LRR containing protein, expressed -
11 Sobic.003G249500 expressed protein -
12 Sobic.008G123000 kinesin-4, putative, expressed K10406: kinesin family member C2/C3
13 Sobic.002G325200 harpin-induced protein 1 domain containing protein, expressed -
14 Sobic.001G088400 kinesin motor domain containing protein, putative, expressed K10400: kinesin family member 15
15 Sobic.001G462300 cyclin, putative, expressed K06627: cyclin-A
16 Sobic.004G081400 expressed protein -
17 Sobic.001G454700 expressed protein -
18 Sobic.002G168400 RGH2B, putative, expressed -
19 Sobic.006G237300 gibberellin 20 oxidase 2, putative, expressed -
20 Sobic.005G100500 RNA polymerase subunit, putative, expressed K03020: RPC19, DNA-directed RNA polymerases I and III subunit RPAC2


Gene co-expression network
sample Sobic001G105000 Sobic001G105000 Sobic010G254700 Sobic010G254700 Sobic001G105000--Sobic010G254700 Sobic003G055400 Sobic003G055400 Sobic001G105000--Sobic003G055400 Sobic002G403700 Sobic002G403700 Sobic001G105000--Sobic002G403700 Sobic004G037100 Sobic004G037100 Sobic001G105000--Sobic004G037100 Sobic006G108500 Sobic006G108500 Sobic001G105000--Sobic006G108500 Sobic002G325500 Sobic002G325500 Sobic001G105000--Sobic002G325500 Sobic004G064700 Sobic004G064700 Sobic001G105000--Sobic004G064700 Sobic003G409500 Sobic003G409500 Sobic001G105000--Sobic003G409500 SobicK010100 SobicK010100 Sobic001G105000--SobicK010100 Sobic010G254700--Sobic001G105000 Sobic003G043900 Sobic003G043900 Sobic010G254700--Sobic003G043900 Sobic001G088400 Sobic001G088400 Sobic010G254700--Sobic001G088400 Sobic004G243200 Sobic004G243200 Sobic010G254700--Sobic004G243200 Sobic010G254700--Sobic004G064700 Sobic004G203800 Sobic004G203800 Sobic010G254700--Sobic004G203800 Sobic001G304800 Sobic001G304800 Sobic010G254700--Sobic001G304800 Sobic001G109700 Sobic001G109700 Sobic010G254700--Sobic001G109700 Sobic010G158832 Sobic010G158832 Sobic010G254700--Sobic010G158832 Sobic003G055400--Sobic006G108500 Sobic003G249500 Sobic003G249500 Sobic003G055400--Sobic003G249500 Sobic002G104600 Sobic002G104600 Sobic003G055400--Sobic002G104600 Sobic003G055400--Sobic002G403700 Sobic008G033800 Sobic008G033800 Sobic003G055400--Sobic008G033800 Sobic001G293900 Sobic001G293900 Sobic003G055400--Sobic001G293900 Sobic003G119750 Sobic003G119750 Sobic003G055400--Sobic003G119750 Sobic001G454700 Sobic001G454700 Sobic003G055400--Sobic001G454700 Sobic004G104200 Sobic004G104200 Sobic003G055400--Sobic004G104200 Sobic002G403700--Sobic003G055400 Sobic002G403700--Sobic002G104600 Sobic006G063800 Sobic006G063800 Sobic002G403700--Sobic006G063800 Sobic002G403700--Sobic003G409500 Sobic002G403700--Sobic006G108500 Sobic005G100500 Sobic005G100500 Sobic002G403700--Sobic005G100500 Sobic002G403700--Sobic001G454700 Sobic002G403700--Sobic001G105000 Sobic001G518050 Sobic001G518050 Sobic002G403700--Sobic001G518050 Sobic002G168400 Sobic002G168400 Sobic004G037100--Sobic002G168400 Sobic004G191901 Sobic004G191901 Sobic004G037100--Sobic004G191901 Sobic009G092300 Sobic009G092300 Sobic004G037100--Sobic009G092300 Sobic004G037100--Sobic003G249500 Sobic009G074200 Sobic009G074200 Sobic004G037100--Sobic009G074200 Sobic001G494200 Sobic001G494200 Sobic004G037100--Sobic001G494200 Sobic001G487900 Sobic001G487900 Sobic004G037100--Sobic001G487900 Sobic007G137501 Sobic007G137501 Sobic004G037100--Sobic007G137501 Sobic002G138400 Sobic002G138400 Sobic004G037100--Sobic002G138400 Sobic005G021400 Sobic005G021400 Sobic006G108500--Sobic005G021400 Sobic010G267300 Sobic010G267300 Sobic006G108500--Sobic010G267300 Sobic006G108500--Sobic005G100500 Sobic001G395600 Sobic001G395600 Sobic006G108500--Sobic001G395600 Sobic001G450900 Sobic001G450900 Sobic006G108500--Sobic001G450900 Sobic006G108500--Sobic001G454700 Sobic001G462300 Sobic001G462300 Sobic006G108500--Sobic001G462300 Sobic004G157050 Sobic004G157050 Sobic006G108500--Sobic004G157050 Sobic006G108500--Sobic003G055400 Sobic001G035300 Sobic001G035300 Sobic002G325500--Sobic001G035300 Sobic002G424500 Sobic002G424500 Sobic002G325500--Sobic002G424500 Sobic007G005100 Sobic007G005100 Sobic002G325500--Sobic007G005100 Sobic004G106500 Sobic004G106500 Sobic002G325500--Sobic004G106500 Sobic001G228900 Sobic001G228900 Sobic002G325500--Sobic001G228900 Sobic007G061600 Sobic007G061600 Sobic002G325500--Sobic007G061600 Sobic008G078800 Sobic008G078800 Sobic002G325500--Sobic008G078800 Sobic008G019900 Sobic008G019900 Sobic002G325500--Sobic008G019900 Sobic002G325500--SobicK010100 Sobic004G312400 Sobic004G312400 Sobic004G064700--Sobic004G312400 Sobic001G221601 Sobic001G221601 Sobic004G064700--Sobic001G221601 Sobic004G064700--Sobic001G462300 Sobic008G106100 Sobic008G106100 Sobic004G064700--Sobic008G106100 Sobic009G195500 Sobic009G195500 Sobic004G064700--Sobic009G195500 Sobic004G064700--Sobic003G409500 Sobic004G064700--Sobic001G088400 Sobic002G164900 Sobic002G164900 Sobic004G064700--Sobic002G164900 Sobic003G016950 Sobic003G016950 Sobic004G064700--Sobic003G016950 Sobic003G409500--Sobic001G395600 Sobic002G157050 Sobic002G157050 Sobic003G409500--Sobic002G157050 Sobic003G409500--Sobic005G100500 Sobic003G409500--Sobic010G267300 Sobic003G409500--Sobic006G108500 Sobic001G171700 Sobic001G171700 Sobic003G409500--Sobic001G171700 Sobic001G465600 Sobic001G465600 Sobic003G409500--Sobic001G465600 Sobic003G409500--Sobic004G157050 Sobic010G002301 Sobic010G002301 Sobic003G409500--Sobic010G002301 Sobic003G080600 Sobic003G080600 SobicK010100--Sobic003G080600 Sobic002G165020 Sobic002G165020 SobicK010100--Sobic002G165020 Sobic010G219800 Sobic010G219800 SobicK010100--Sobic010G219800 Sobic002G235800 Sobic002G235800 SobicK010100--Sobic002G235800 Sobic005G161900 Sobic005G161900 SobicK010100--Sobic005G161900 SobicK010100--Sobic004G106500 SobicK010100--Sobic002G424500 SobicK010100--Sobic002G325500 Sobic006G246500 Sobic006G246500 SobicK010100--Sobic006G246500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.