Gene annotation
Transcriptome id Sobic.006G237300.1,Sobic.006G237300.2
Synonym Sb06g030410
Functional annotation gibberellin 20 oxidase 2, putative, expressed
UniProt C5Y900 , A0A1Z5RFZ7
Pfam PF03171 PF14226 PF14226 PF03171
Panther DB PTHR10209 PTHR10209:SF188
NCBI CDD KOG0143; Iron/ascorbate family oxidoreductases
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT3G51240 : flavanone 3-hydroxylase,2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
RAP-DB (Rice) LOC_Os04g55070.1 : gibberellin 20 oxidase 2, putative, expressed
MaizeGDB (Corn) Zm00025a057184 , Zm00025a009574
Brachypodium -
Barley HORVU2Hr1G114980.3 , HORVU2Hr1G114980.2 , HORVU2Hr1G114980.1 , HORVU2Hr1G114980.5 , HORVU2Hr1G114980.4
Wheat TraesCS2A02G519900 , TraesCS2B02G548100 , TraesCS2D02G521300 , TraesCS2B02G548800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G237300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G105000 basic helix-loop-helix protein, putative, expressed -
2 Sobic.008G123000 kinesin-4, putative, expressed K10406: kinesin family member C2/C3
3 Sobic.004G178600 OsFBX1 - F-box domain containing protein, expressed -
4 Sobic.007G072300 OsFBL44 - F-box domain and LRR containing protein, expressed -
5 Sobic.005G154400 stripe rust resistance protein Yr10, putative, expressed -
6 Sobic.005G030600 DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed K03013: RPB5, DNA-directed RNA polymerases I, II, and III subunit RPABC1
7 Sobic.004G037100 cycloartenol synthase, putative, expressed K01853: cycloartenol synthase
8 Sobic.007G005100 L-asparaginase precursor protein, putative, expressed K13051: ASRGL1, L-asparaginase / beta-aspartyl-peptidase
9 Sobic.009G162700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@exostosin family domain containing protein, expressed -
10 Sobic.003G246300 expressed protein -
11 Sobic.004G187600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed K10664: E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
12 Sobic.004G089100 expressed protein -
13 Sobic.010G032500 protein kinase domain containing protein, expressed -
14 Sobic.010G219800 vacuolar-sorting receptor precursor, putative, expressed -
15 Sobic.010G254700 ternary complex factor MIP1, putative, expressed -
16 Sobic.002G168400 RGH2B, putative, expressed -
17 Sobic.002G325500 ankyrin repeat family protein, putative, expressed -
18 Sobic.002G164900 GDSL-like lipase/acylhydrolase, putative, expressed -
19 Sobic.008G078800 cytochrome P450, putative, expressed K05917: sterol 14alpha-demethylase
20 Sobic.001G094800 similar to IAA1 protein(PubMedID : 29862293)@"domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsIAA13 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA


Gene co-expression network
sample Sobic006G237300 Sobic006G237300 Sobic001G105000 Sobic001G105000 Sobic006G237300--Sobic001G105000 Sobic008G123000 Sobic008G123000 Sobic006G237300--Sobic008G123000 Sobic004G178600 Sobic004G178600 Sobic006G237300--Sobic004G178600 Sobic007G072300 Sobic007G072300 Sobic006G237300--Sobic007G072300 Sobic005G154400 Sobic005G154400 Sobic006G237300--Sobic005G154400 Sobic005G030600 Sobic005G030600 Sobic006G237300--Sobic005G030600 Sobic004G037100 Sobic004G037100 Sobic006G237300--Sobic004G037100 Sobic007G005100 Sobic007G005100 Sobic006G237300--Sobic007G005100 Sobic009G162700 Sobic009G162700 Sobic006G237300--Sobic009G162700 Sobic010G254700 Sobic010G254700 Sobic001G105000--Sobic010G254700 Sobic003G055400 Sobic003G055400 Sobic001G105000--Sobic003G055400 Sobic002G403700 Sobic002G403700 Sobic001G105000--Sobic002G403700 Sobic001G105000--Sobic004G037100 Sobic006G108500 Sobic006G108500 Sobic001G105000--Sobic006G108500 Sobic002G325500 Sobic002G325500 Sobic001G105000--Sobic002G325500 Sobic004G064700 Sobic004G064700 Sobic001G105000--Sobic004G064700 Sobic003G409500 Sobic003G409500 Sobic001G105000--Sobic003G409500 SobicK010100 SobicK010100 Sobic001G105000--SobicK010100 Sobic006G183500 Sobic006G183500 Sobic008G123000--Sobic006G183500 Sobic001G332933 Sobic001G332933 Sobic008G123000--Sobic001G332933 Sobic002G276500 Sobic002G276500 Sobic008G123000--Sobic002G276500 Sobic010G241450 Sobic010G241450 Sobic008G123000--Sobic010G241450 Sobic002G189750 Sobic002G189750 Sobic008G123000--Sobic002G189750 Sobic001G110500 Sobic001G110500 Sobic008G123000--Sobic001G110500 Sobic006G265100 Sobic006G265100 Sobic008G123000--Sobic006G265100 Sobic003G204750 Sobic003G204750 Sobic008G123000--Sobic003G204750 Sobic007G070100 Sobic007G070100 Sobic008G123000--Sobic007G070100 Sobic010G046601 Sobic010G046601 Sobic004G178600--Sobic010G046601 Sobic004G178600--Sobic007G005100 Sobic004G187600 Sobic004G187600 Sobic004G178600--Sobic004G187600 Sobic004G089100 Sobic004G089100 Sobic004G178600--Sobic004G089100 Sobic002G028566 Sobic002G028566 Sobic004G178600--Sobic002G028566 Sobic003G315166 Sobic003G315166 Sobic004G178600--Sobic003G315166 Sobic004G178600--Sobic006G265100 Sobic007G202360 Sobic007G202360 Sobic004G178600--Sobic007G202360 Sobic004G178600--Sobic002G189750 Sobic004G081400 Sobic004G081400 Sobic007G072300--Sobic004G081400 Sobic004G053900 Sobic004G053900 Sobic007G072300--Sobic004G053900 Sobic002G191000 Sobic002G191000 Sobic007G072300--Sobic002G191000 Sobic010G008900 Sobic010G008900 Sobic007G072300--Sobic010G008900 Sobic007G072300--Sobic001G105000 Sobic003G118100 Sobic003G118100 Sobic007G072300--Sobic003G118100 Sobic003G043900 Sobic003G043900 Sobic007G072300--Sobic003G043900 Sobic003G008700 Sobic003G008700 Sobic007G072300--Sobic003G008700 Sobic006G035600 Sobic006G035600 Sobic007G072300--Sobic006G035600 Sobic005G154300 Sobic005G154300 Sobic005G154400--Sobic005G154300 Sobic010G003100 Sobic010G003100 Sobic005G154400--Sobic010G003100 Sobic002G255500 Sobic002G255500 Sobic005G154400--Sobic002G255500 Sobic004G271500 Sobic004G271500 Sobic005G154400--Sobic004G271500 Sobic005G154400--Sobic002G191000 Sobic010G150325 Sobic010G150325 Sobic005G154400--Sobic010G150325 Sobic001G029800 Sobic001G029800 Sobic005G154400--Sobic001G029800 Sobic001G070300 Sobic001G070300 Sobic005G154400--Sobic001G070300 Sobic010G248500 Sobic010G248500 Sobic005G154400--Sobic010G248500 Sobic002G306500 Sobic002G306500 Sobic005G030600--Sobic002G306500 Sobic003G107000 Sobic003G107000 Sobic005G030600--Sobic003G107000 Sobic001G365266 Sobic001G365266 Sobic005G030600--Sobic001G365266 Sobic009G103300 Sobic009G103300 Sobic005G030600--Sobic009G103300 Sobic004G053100 Sobic004G053100 Sobic005G030600--Sobic004G053100 Sobic004G248300 Sobic004G248300 Sobic005G030600--Sobic004G248300 Sobic005G030600--Sobic010G254700 Sobic003G186600 Sobic003G186600 Sobic005G030600--Sobic003G186600 Sobic005G100500 Sobic005G100500 Sobic005G030600--Sobic005G100500 Sobic002G168400 Sobic002G168400 Sobic004G037100--Sobic002G168400 Sobic004G191901 Sobic004G191901 Sobic004G037100--Sobic004G191901 Sobic009G092300 Sobic009G092300 Sobic004G037100--Sobic009G092300 Sobic003G249500 Sobic003G249500 Sobic004G037100--Sobic003G249500 Sobic009G074200 Sobic009G074200 Sobic004G037100--Sobic009G074200 Sobic001G494200 Sobic001G494200 Sobic004G037100--Sobic001G494200 Sobic001G487900 Sobic001G487900 Sobic004G037100--Sobic001G487900 Sobic007G137501 Sobic007G137501 Sobic004G037100--Sobic007G137501 Sobic002G138400 Sobic002G138400 Sobic004G037100--Sobic002G138400 Sobic007G005100--Sobic004G187600 Sobic001G070100 Sobic001G070100 Sobic007G005100--Sobic001G070100 Sobic007G005100--Sobic004G089100 Sobic005G048400 Sobic005G048400 Sobic007G005100--Sobic005G048400 Sobic007G005100--Sobic002G325500 Sobic007G005100--Sobic002G028566 Sobic008G078800 Sobic008G078800 Sobic007G005100--Sobic008G078800 Sobic007G061600 Sobic007G061600 Sobic007G005100--Sobic007G061600 Sobic010G032500 Sobic010G032500 Sobic007G005100--Sobic010G032500 Sobic003G387500 Sobic003G387500 Sobic009G162700--Sobic003G387500 Sobic006G144600 Sobic006G144600 Sobic009G162700--Sobic006G144600 Sobic001G406700 Sobic001G406700 Sobic009G162700--Sobic001G406700 Sobic010G232500 Sobic010G232500 Sobic009G162700--Sobic010G232500 Sobic002G167600 Sobic002G167600 Sobic009G162700--Sobic002G167600 Sobic002G205500 Sobic002G205500 Sobic009G162700--Sobic002G205500 Sobic001G224300 Sobic001G224300 Sobic009G162700--Sobic001G224300 Sobic008G137000 Sobic008G137000 Sobic009G162700--Sobic008G137000 Sobic002G352000 Sobic002G352000 Sobic009G162700--Sobic002G352000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.