Gene annotation
Transcriptome id Sobic.001G094800.1
Synonym IAA16,auxin/indole-3-acetic acid (Aux/IAA), Sb01g008480, SbIAA2
Functional annotation similar to IAA1 protein (PubMedID : 29862293)
"domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA and BR treatments" (PubMedID : 20499123)
OsIAA13 - Auxin-responsive Aux/IAA gene family member, expressed
UniProt C5X187
Pfam PF02309
Panther DB PTHR31734 PTHR31734:SF21
NCBI CDD -
KEGG Orthology K14484; auxin-responsive protein IAA
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT3G04730 : indoleacetic acid-induced protein 16
RAP-DB (Rice) LOC_Os03g53150.1 : OsIAA13 - Auxin-responsive Aux/IAA gene family member, expressed
MaizeGDB (Corn) Zm00025a016835 , Zm00025a008098
Brachypodium KQK13275 , KQK14081 , KQK14082 , KQK14083 , KQJ85960 , KQJ85961
Barley HORVU5Hr1G094240.1 , HORVU5Hr1G094240.2 , HORVU5Hr1G093580.6 , HORVU5Hr1G093580.7 , HORVU5Hr1G093580.2 , HORVU5Hr1G093580.3 , HORVU5Hr1G093580.8 , HORVU5Hr1G094220.1
Wheat TraesCS5B02G058500 , TraesCS5B02G386800 , TraesCS5D02G069300 , TraesCS5D02G388300 , TraesCS5D02G388300 , TraesCS5B02G381900 , TraesCS5A02G058600 , TraesCS5A02G378300 , TraesCS5A02G378300 , TraesCS5D02G392000 , TraesCS5A02G382600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G137300 RALFL43 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
2 Sobic.002G218800 anthocyanidin 3-O-glucosyltransferase, putative, expressed -
3 Sobic.004G348500 RING-H2 finger protein ATL5G, putative, expressed -
4 Sobic.003G390500 POEI32 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
5 Sobic.002G356500 expressed protein -
6 Sobic.004G046400 rhodanese-like domain containing protein, putative, expressed -
7 Sobic.003G212300 mitochondrial chaperone BCS1, putative, expressed -
8 Sobic.004G089100 expressed protein -
9 Sobic.003G121100 peroxidase precursor, putative, expressed K00430: peroxidase
10 Sobic.001G295000 cyclin, putative, expressed -
11 Sobic.001G357700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid permease family protein, putative, expressed -
12 Sobic.004G163400 PAN domain-containing protein At5g03700 precursor, putative, expressed -
13 Sobic.001G144700 LTPL71 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
14 Sobic.002G281100 plastocyanin-like domain containing protein, putative, expressed -
15 Sobic.007G108700 expressed protein -
16 Sobic.004G188100 expressed protein -
17 Sobic.009G105300 zinc finger, C3HC4 type domain containing protein, expressed -
18 Sobic.006G134001 - -
19 Sobic.006G008100 expressed protein -
20 Sobic.009G160800 oxidoreductase, aldo/keto reductase family protein, putative, expressed -


Gene co-expression network
sample Sobic001G094800 Sobic001G094800 Sobic008G137300 Sobic008G137300 Sobic001G094800--Sobic008G137300 Sobic002G218800 Sobic002G218800 Sobic001G094800--Sobic002G218800 Sobic004G348500 Sobic004G348500 Sobic001G094800--Sobic004G348500 Sobic003G390500 Sobic003G390500 Sobic001G094800--Sobic003G390500 Sobic002G356500 Sobic002G356500 Sobic001G094800--Sobic002G356500 Sobic004G046400 Sobic004G046400 Sobic001G094800--Sobic004G046400 Sobic003G212300 Sobic003G212300 Sobic001G094800--Sobic003G212300 Sobic004G089100 Sobic004G089100 Sobic001G094800--Sobic004G089100 Sobic003G121100 Sobic003G121100 Sobic001G094800--Sobic003G121100 Sobic002G281100 Sobic002G281100 Sobic008G137300--Sobic002G281100 Sobic009G183800 Sobic009G183800 Sobic008G137300--Sobic009G183800 Sobic010G083400 Sobic010G083400 Sobic008G137300--Sobic010G083400 Sobic002G334200 Sobic002G334200 Sobic008G137300--Sobic002G334200 Sobic008G137300--Sobic003G390500 Sobic008G137300--Sobic002G356500 Sobic008G137300--Sobic001G094800 Sobic002G391800 Sobic002G391800 Sobic008G137300--Sobic002G391800 Sobic010G128400 Sobic010G128400 Sobic008G137300--Sobic010G128400 Sobic002G218800--Sobic010G128400 Sobic001G237800 Sobic001G237800 Sobic002G218800--Sobic001G237800 Sobic002G218800--Sobic003G121100 Sobic003G400900 Sobic003G400900 Sobic002G218800--Sobic003G400900 Sobic006G225500 Sobic006G225500 Sobic002G218800--Sobic006G225500 Sobic003G140700 Sobic003G140700 Sobic002G218800--Sobic003G140700 Sobic006G170600 Sobic006G170600 Sobic002G218800--Sobic006G170600 Sobic002G255000 Sobic002G255000 Sobic002G218800--Sobic002G255000 Sobic001G438200 Sobic001G438200 Sobic002G218800--Sobic001G438200 Sobic006G087300 Sobic006G087300 Sobic004G348500--Sobic006G087300 Sobic006G019700 Sobic006G019700 Sobic004G348500--Sobic006G019700 Sobic001G149400 Sobic001G149400 Sobic004G348500--Sobic001G149400 Sobic007G090472 Sobic007G090472 Sobic004G348500--Sobic007G090472 Sobic006G135300 Sobic006G135300 Sobic004G348500--Sobic006G135300 Sobic006G250400 Sobic006G250400 Sobic004G348500--Sobic006G250400 Sobic004G348500--Sobic003G390500 Sobic001G357700 Sobic001G357700 Sobic004G348500--Sobic001G357700 Sobic004G271800 Sobic004G271800 Sobic004G348500--Sobic004G271800 Sobic001G507100 Sobic001G507100 Sobic003G390500--Sobic001G507100 Sobic009G160800 Sobic009G160800 Sobic003G390500--Sobic009G160800 Sobic009G181600 Sobic009G181600 Sobic003G390500--Sobic009G181600 Sobic006G106900 Sobic006G106900 Sobic003G390500--Sobic006G106900 Sobic003G390500--Sobic001G438200 Sobic004G306900 Sobic004G306900 Sobic003G390500--Sobic004G306900 Sobic006G273300 Sobic006G273300 Sobic003G390500--Sobic006G273300 Sobic005G202300 Sobic005G202300 Sobic003G390500--Sobic005G202300 Sobic003G064800 Sobic003G064800 Sobic003G390500--Sobic003G064800 Sobic002G356500--Sobic009G183800 Sobic007G108700 Sobic007G108700 Sobic002G356500--Sobic007G108700 Sobic005G228400 Sobic005G228400 Sobic002G356500--Sobic005G228400 Sobic008G019900 Sobic008G019900 Sobic002G356500--Sobic008G019900 Sobic002G356500--Sobic002G281100 Sobic001G062500 Sobic001G062500 Sobic002G356500--Sobic001G062500 Sobic002G356500--Sobic002G218800 Sobic002G356500--Sobic004G046400 Sobic009G035900 Sobic009G035900 Sobic002G356500--Sobic009G035900 Sobic002G379700 Sobic002G379700 Sobic004G046400--Sobic002G379700 Sobic003G249500 Sobic003G249500 Sobic004G046400--Sobic003G249500 Sobic002G168400 Sobic002G168400 Sobic004G046400--Sobic002G168400 Sobic004G046400--Sobic002G356500 Sobic004G046400--Sobic009G183800 Sobic004G046400--Sobic003G212300 Sobic004G106500 Sobic004G106500 Sobic004G046400--Sobic004G106500 Sobic004G046400--Sobic008G019900 Sobic004G037100 Sobic004G037100 Sobic004G046400--Sobic004G037100 Sobic003G212300--Sobic007G108700 Sobic003G212300--Sobic004G046400 Sobic005G096600 Sobic005G096600 Sobic003G212300--Sobic005G096600 Sobic003G024900 Sobic003G024900 Sobic003G212300--Sobic003G024900 Sobic003G212300--Sobic002G356500 Sobic004G163400 Sobic004G163400 Sobic003G212300--Sobic004G163400 Sobic001G021900 Sobic001G021900 Sobic003G212300--Sobic001G021900 Sobic002G235500 Sobic002G235500 Sobic003G212300--Sobic002G235500 Sobic002G042100 Sobic002G042100 Sobic003G212300--Sobic002G042100 Sobic002G028566 Sobic002G028566 Sobic004G089100--Sobic002G028566 Sobic006G101900 Sobic006G101900 Sobic004G089100--Sobic006G101900 Sobic004G187600 Sobic004G187600 Sobic004G089100--Sobic004G187600 Sobic006G133300 Sobic006G133300 Sobic004G089100--Sobic006G133300 Sobic005G219500 Sobic005G219500 Sobic004G089100--Sobic005G219500 Sobic001G416100 Sobic001G416100 Sobic004G089100--Sobic001G416100 Sobic001G414800 Sobic001G414800 Sobic004G089100--Sobic001G414800 Sobic007G005100 Sobic007G005100 Sobic004G089100--Sobic007G005100 Sobic009G225800 Sobic009G225800 Sobic004G089100--Sobic009G225800 Sobic002G183700 Sobic002G183700 Sobic003G121100--Sobic002G183700 Sobic004G110700 Sobic004G110700 Sobic003G121100--Sobic004G110700 Sobic003G121100--Sobic006G225500 Sobic003G121100--Sobic003G140700 Sobic003G269600 Sobic003G269600 Sobic003G121100--Sobic003G269600 Sobic003G311800 Sobic003G311800 Sobic003G121100--Sobic003G311800 Sobic003G121100--Sobic006G170600 Sobic003G399600 Sobic003G399600 Sobic003G121100--Sobic003G399600 Sobic006G274933 Sobic006G274933 Sobic003G121100--Sobic006G274933
Octagon: transcription factors


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