Gene annotation
Transcriptome id Sobic.004G348500.1
Synonym Sb04g037520
Functional annotation RING-H2 finger protein ATL5G, putative, expressed
UniProt A0A1Z5RQX8
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF120
NCBI CDD KOG1493; Anaphase-promoting complex (APC), subunit 11
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G04360 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os02g57460.1 : RING-H2 finger protein ATL5G, putative, expressed
MaizeGDB (Corn) Zm00025a032778
Brachypodium PNT69450
Barley HORVU6Hr1G091610.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G087300 OsCML26 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
2 Sobic.006G019700 transferase family protein, putative, expressed -
3 Sobic.001G149400 ankyrin repeat domain-containing protein 50, putative, expressed -
4 Sobic.007G090472 - -
5 Sobic.006G135300 expressed protein -
6 Sobic.006G250400 expressed protein -
7 Sobic.003G390500 POEI32 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
8 Sobic.001G357700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid permease family protein, putative, expressed -
9 Sobic.004G271800 WRKY66, expressed -
10 Sobic.010G082000 xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase
11 Sobic.010G152400 glycosyltransferase, putative, expressed -
12 Sobic.006G266800 aspartic proteinase nepenthesin precursor, putative, expressed -
13 Sobic.004G139300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450 71D10, putative, expressed -
14 Sobic.005G110514 - -
15 Sobic.001G360500 peroxidase precursor, putative, expressed K00430: peroxidase
16 Sobic.007G007300 methyltransferase domain containing protein, expressed -
17 Sobic.010G070400 DNA binding protein, putative, expressed -
18 Sobic.009G088500 zinc finger, C3HC4 type domain containing protein, expressed -
19 Sobic.003G240500 glycosyl transferase, group 1 domain containing protein, expressed -
20 Sobic.004G322000 hypro1, putative, expressed -


Gene co-expression network
sample Sobic004G348500 Sobic004G348500 Sobic006G087300 Sobic006G087300 Sobic004G348500--Sobic006G087300 Sobic006G019700 Sobic006G019700 Sobic004G348500--Sobic006G019700 Sobic001G149400 Sobic001G149400 Sobic004G348500--Sobic001G149400 Sobic007G090472 Sobic007G090472 Sobic004G348500--Sobic007G090472 Sobic006G135300 Sobic006G135300 Sobic004G348500--Sobic006G135300 Sobic006G250400 Sobic006G250400 Sobic004G348500--Sobic006G250400 Sobic003G390500 Sobic003G390500 Sobic004G348500--Sobic003G390500 Sobic001G357700 Sobic001G357700 Sobic004G348500--Sobic001G357700 Sobic004G271800 Sobic004G271800 Sobic004G348500--Sobic004G271800 Sobic006G106900 Sobic006G106900 Sobic006G087300--Sobic006G106900 Sobic001G507100 Sobic001G507100 Sobic006G087300--Sobic001G507100 Sobic005G166700 Sobic005G166700 Sobic006G087300--Sobic005G166700 Sobic001G414800 Sobic001G414800 Sobic006G087300--Sobic001G414800 Sobic001G218400 Sobic001G218400 Sobic006G087300--Sobic001G218400 Sobic003G353200 Sobic003G353200 Sobic006G087300--Sobic003G353200 Sobic003G280000 Sobic003G280000 Sobic006G087300--Sobic003G280000 Sobic001G014700 Sobic001G014700 Sobic006G087300--Sobic001G014700 Sobic004G029300 Sobic004G029300 Sobic006G087300--Sobic004G029300 Sobic004G306900 Sobic004G306900 Sobic006G019700--Sobic004G306900 Sobic003G182200 Sobic003G182200 Sobic006G019700--Sobic003G182200 Sobic006G028500 Sobic006G028500 Sobic006G019700--Sobic006G028500 Sobic004G322100 Sobic004G322100 Sobic006G019700--Sobic004G322100 Sobic010G082000 Sobic010G082000 Sobic006G019700--Sobic010G082000 Sobic006G092700 Sobic006G092700 Sobic006G019700--Sobic006G092700 Sobic010G152400 Sobic010G152400 Sobic006G019700--Sobic010G152400 Sobic006G019700--Sobic006G135300 Sobic003G000100 Sobic003G000100 Sobic006G019700--Sobic003G000100 Sobic001G149400--Sobic010G082000 Sobic001G149400--Sobic006G135300 Sobic005G115300 Sobic005G115300 Sobic001G149400--Sobic005G115300 Sobic001G149400--Sobic006G019700 Sobic001G149400--Sobic007G090472 Sobic009G259800 Sobic009G259800 Sobic001G149400--Sobic009G259800 Sobic005G175900 Sobic005G175900 Sobic001G149400--Sobic005G175900 Sobic003G215300 Sobic003G215300 Sobic001G149400--Sobic003G215300 Sobic001G149400--Sobic006G092700 Sobic010G028100 Sobic010G028100 Sobic007G090472--Sobic010G028100 Sobic007G073000 Sobic007G073000 Sobic007G090472--Sobic007G073000 Sobic001G360500 Sobic001G360500 Sobic007G090472--Sobic001G360500 Sobic007G090472--Sobic010G082000 Sobic007G090472--Sobic006G092700 Sobic007G090472--Sobic006G135300 Sobic006G229100 Sobic006G229100 Sobic007G090472--Sobic006G229100 Sobic001G503000 Sobic001G503000 Sobic007G090472--Sobic001G503000 Sobic007G090472--Sobic003G215300 Sobic006G135300--Sobic006G092700 Sobic006G135300--Sobic010G082000 Sobic006G135300--Sobic007G073000 Sobic006G135300--Sobic010G028100 Sobic006G135300--Sobic006G019700 Sobic006G135300--Sobic010G152400 Sobic003G322100 Sobic003G322100 Sobic006G135300--Sobic003G322100 Sobic006G135300--Sobic004G306900 Sobic002G146000 Sobic002G146000 Sobic006G135300--Sobic002G146000 Sobic002G281100 Sobic002G281100 Sobic006G250400--Sobic002G281100 Sobic010G241700 Sobic010G241700 Sobic006G250400--Sobic010G241700 Sobic006G250400--Sobic004G348500 Sobic001G277600 Sobic001G277600 Sobic006G250400--Sobic001G277600 Sobic002G334100 Sobic002G334100 Sobic006G250400--Sobic002G334100 Sobic005G048400 Sobic005G048400 Sobic006G250400--Sobic005G048400 Sobic010G083400 Sobic010G083400 Sobic006G250400--Sobic010G083400 Sobic003G240500 Sobic003G240500 Sobic006G250400--Sobic003G240500 Sobic010G204200 Sobic010G204200 Sobic006G250400--Sobic010G204200 Sobic003G390500--Sobic001G507100 Sobic009G160800 Sobic009G160800 Sobic003G390500--Sobic009G160800 Sobic009G181600 Sobic009G181600 Sobic003G390500--Sobic009G181600 Sobic003G390500--Sobic006G106900 Sobic001G438200 Sobic001G438200 Sobic003G390500--Sobic001G438200 Sobic003G390500--Sobic004G306900 Sobic006G273300 Sobic006G273300 Sobic003G390500--Sobic006G273300 Sobic005G202300 Sobic005G202300 Sobic003G390500--Sobic005G202300 Sobic003G064800 Sobic003G064800 Sobic003G390500--Sobic003G064800 Sobic001G239200 Sobic001G239200 Sobic001G357700--Sobic001G239200 Sobic001G357700--Sobic001G149400 Sobic006G266800 Sobic006G266800 Sobic001G357700--Sobic006G266800 Sobic001G357700--Sobic007G090472 Sobic001G357700--Sobic004G348500 Sobic001G357700--Sobic009G160800 Sobic004G139300 Sobic004G139300 Sobic001G357700--Sobic004G139300 Sobic001G357700--Sobic010G204200 Sobic001G357700--Sobic006G135300 Sobic004G271800--Sobic003G000100 Sobic003G240400 Sobic003G240400 Sobic004G271800--Sobic003G240400 Sobic004G271800--Sobic010G152400 Sobic004G271800--Sobic004G322100 Sobic004G271800--Sobic006G019700 Sobic004G271800--Sobic006G092700 Sobic004G271800--Sobic003G215300 Sobic008G035800 Sobic008G035800 Sobic004G271800--Sobic008G035800 Sobic004G106100 Sobic004G106100 Sobic004G271800--Sobic004G106100
Octagon: transcription factors


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