Gene annotation
Transcriptome id Sobic.001G357700.1
Synonym Sb01g034170
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
amino acid permease family protein, putative, expressed
UniProt A0A1B6QMZ4
Pfam PF13520
Panther DB PTHR11785 PTHR11785:SF316
NCBI CDD KOG1287; Amino acid transporters
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0015171amino acid transmembrane transporter activity GO:0003333amino acid transmembrane transport


Orthologs (automatic annotation)
TAIR AT3G13620 : Amino acid permease family protein
RAP-DB (Rice) LOC_Os03g25920.1 : amino acid permease family protein, putative, expressed
MaizeGDB (Corn) Zm00025a002652 , Zm00025a002655 , Zm00025a002651
Brachypodium PNT77334 , KQK21521 , KQK21520
Barley HORVU3Hr1G005120.1 , HORVU3Hr1G005010.4 , HORVU3Hr1G005010.3 , HORVU4Hr1G085290.12 , HORVU4Hr1G085290.13 , HORVU4Hr1G085290.10 , HORVU4Hr1G085290.11 , HORVU7Hr1G106710.8 , HORVU7Hr1G106710.9 , HORVU7Hr1G106710.1 , HORVU7Hr1G106710.2 , HORVU7Hr1G106710.3 , HORVU7Hr1G106710.4 , HORVU7Hr1G106710.5 , HORVU7Hr1G106710.7 , HORVU4Hr1G085290.4 , HORVU4Hr1G085290.5 , HORVU4Hr1G085290.6 , HORVU4Hr1G085290.8 , HORVU4Hr1G085290.9
Wheat TraesCS7B02G365600 , TraesCS5D02G321300 , TraesCS5D02G531700 , TraesCS4B02G350000 , TraesCS5A02G315000 , TraesCS3B02G031700 , TraesCS5B02G533500 , TraesCS3A02G030900 , TraesCS5B02G316000 , TraesCS7A02G464900 , TraesCS4D02G344800 , TraesCS7D02G452600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G239200 hsp20/alpha crystallin family protein, putative, expressed -
2 Sobic.001G149400 ankyrin repeat domain-containing protein 50, putative, expressed -
3 Sobic.006G266800 aspartic proteinase nepenthesin precursor, putative, expressed -
4 Sobic.007G090472 - -
5 Sobic.004G348500 RING-H2 finger protein ATL5G, putative, expressed -
6 Sobic.009G160800 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
7 Sobic.004G139300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450 71D10, putative, expressed -
8 Sobic.010G204200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450 71D7, putative, expressed -
9 Sobic.006G135300 expressed protein -
10 Sobic.006G019700 transferase family protein, putative, expressed -
11 Sobic.002G203900 methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
12 Sobic.008G164450 - -
13 Sobic.005G154800 OsWAK98 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed -
14 Sobic.001G349200 sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed -
15 Sobic.007G007300 methyltransferase domain containing protein, expressed -
16 Sobic.003G240500 glycosyl transferase, group 1 domain containing protein, expressed -
17 Sobic.001G274400 serine/threonine-protein kinase BRI1-like 2 precursor, putative, expressed -
18 Sobic.006G229100 receptor-like kinase, putative, expressed -
19 Sobic.002G259100 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@auxin responsive protein, putative, expressed K14488: SAUR family protein
20 Sobic.010G082000 xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase


Gene co-expression network
sample Sobic001G357700 Sobic001G357700 Sobic001G239200 Sobic001G239200 Sobic001G357700--Sobic001G239200 Sobic001G149400 Sobic001G149400 Sobic001G357700--Sobic001G149400 Sobic006G266800 Sobic006G266800 Sobic001G357700--Sobic006G266800 Sobic007G090472 Sobic007G090472 Sobic001G357700--Sobic007G090472 Sobic004G348500 Sobic004G348500 Sobic001G357700--Sobic004G348500 Sobic009G160800 Sobic009G160800 Sobic001G357700--Sobic009G160800 Sobic004G139300 Sobic004G139300 Sobic001G357700--Sobic004G139300 Sobic010G204200 Sobic010G204200 Sobic001G357700--Sobic010G204200 Sobic006G135300 Sobic006G135300 Sobic001G357700--Sobic006G135300 Sobic005G219600 Sobic005G219600 Sobic001G239200--Sobic005G219600 Sobic001G239200--Sobic006G135300 Sobic001G274400 Sobic001G274400 Sobic001G239200--Sobic001G274400 Sobic004G014600 Sobic004G014600 Sobic001G239200--Sobic004G014600 Sobic003G215300 Sobic003G215300 Sobic001G239200--Sobic003G215300 Sobic001G067800 Sobic001G067800 Sobic001G239200--Sobic001G067800 Sobic007G073000 Sobic007G073000 Sobic001G239200--Sobic007G073000 Sobic001G239200--Sobic006G266800 Sobic009G259800 Sobic009G259800 Sobic001G239200--Sobic009G259800 Sobic010G082000 Sobic010G082000 Sobic001G149400--Sobic010G082000 Sobic001G149400--Sobic006G135300 Sobic005G115300 Sobic005G115300 Sobic001G149400--Sobic005G115300 Sobic006G019700 Sobic006G019700 Sobic001G149400--Sobic006G019700 Sobic001G149400--Sobic007G090472 Sobic001G149400--Sobic009G259800 Sobic005G175900 Sobic005G175900 Sobic001G149400--Sobic005G175900 Sobic001G149400--Sobic003G215300 Sobic006G092700 Sobic006G092700 Sobic001G149400--Sobic006G092700 Sobic002G195600 Sobic002G195600 Sobic006G266800--Sobic002G195600 Sobic006G266800--Sobic003G215300 Sobic007G007300 Sobic007G007300 Sobic006G266800--Sobic007G007300 Sobic001G503000 Sobic001G503000 Sobic006G266800--Sobic001G503000 Sobic006G266800--Sobic007G073000 Sobic006G196400 Sobic006G196400 Sobic006G266800--Sobic006G196400 Sobic002G115600 Sobic002G115600 Sobic006G266800--Sobic002G115600 Sobic004G322000 Sobic004G322000 Sobic006G266800--Sobic004G322000 Sobic008G138900 Sobic008G138900 Sobic006G266800--Sobic008G138900 Sobic010G028100 Sobic010G028100 Sobic007G090472--Sobic010G028100 Sobic007G090472--Sobic007G073000 Sobic001G360500 Sobic001G360500 Sobic007G090472--Sobic001G360500 Sobic007G090472--Sobic010G082000 Sobic007G090472--Sobic006G092700 Sobic007G090472--Sobic006G135300 Sobic006G229100 Sobic006G229100 Sobic007G090472--Sobic006G229100 Sobic007G090472--Sobic001G503000 Sobic007G090472--Sobic003G215300 Sobic006G087300 Sobic006G087300 Sobic004G348500--Sobic006G087300 Sobic004G348500--Sobic006G019700 Sobic004G348500--Sobic001G149400 Sobic004G348500--Sobic007G090472 Sobic004G348500--Sobic006G135300 Sobic006G250400 Sobic006G250400 Sobic004G348500--Sobic006G250400 Sobic003G390500 Sobic003G390500 Sobic004G348500--Sobic003G390500 Sobic004G348500--Sobic001G357700 Sobic004G271800 Sobic004G271800 Sobic004G348500--Sobic004G271800 Sobic001G238200 Sobic001G238200 Sobic009G160800--Sobic001G238200 Sobic002G377700 Sobic002G377700 Sobic009G160800--Sobic002G377700 Sobic001G058300 Sobic001G058300 Sobic009G160800--Sobic001G058300 Sobic006G273300 Sobic006G273300 Sobic009G160800--Sobic006G273300 Sobic009G181600 Sobic009G181600 Sobic009G160800--Sobic009G181600 Sobic006G106900 Sobic006G106900 Sobic009G160800--Sobic006G106900 Sobic004G306900 Sobic004G306900 Sobic009G160800--Sobic004G306900 Sobic010G234500 Sobic010G234500 Sobic009G160800--Sobic010G234500 Sobic002G255000 Sobic002G255000 Sobic009G160800--Sobic002G255000 Sobic002G216100 Sobic002G216100 Sobic004G139300--Sobic002G216100 Sobic002G042200 Sobic002G042200 Sobic004G139300--Sobic002G042200 Sobic002G001700 Sobic002G001700 Sobic004G139300--Sobic002G001700 Sobic002G185800 Sobic002G185800 Sobic004G139300--Sobic002G185800 Sobic010G096400 Sobic010G096400 Sobic004G139300--Sobic010G096400 Sobic006G197100 Sobic006G197100 Sobic004G139300--Sobic006G197100 Sobic007G178900 Sobic007G178900 Sobic004G139300--Sobic007G178900 Sobic007G176000 Sobic007G176000 Sobic004G139300--Sobic007G176000 Sobic003G351600 Sobic003G351600 Sobic004G139300--Sobic003G351600 Sobic010G214300 Sobic010G214300 Sobic010G204200--Sobic010G214300 Sobic001G506800 Sobic001G506800 Sobic010G204200--Sobic001G506800 Sobic010G113100 Sobic010G113100 Sobic010G204200--Sobic010G113100 Sobic007G100700 Sobic007G100700 Sobic010G204200--Sobic007G100700 Sobic008G164450 Sobic008G164450 Sobic010G204200--Sobic008G164450 Sobic008G011700 Sobic008G011700 Sobic010G204200--Sobic008G011700 Sobic001G209300 Sobic001G209300 Sobic010G204200--Sobic001G209300 Sobic007G047500 Sobic007G047500 Sobic010G204200--Sobic007G047500 Sobic010G204200--Sobic009G181600 Sobic006G135300--Sobic006G092700 Sobic006G135300--Sobic010G082000 Sobic006G135300--Sobic007G073000 Sobic006G135300--Sobic010G028100 Sobic006G135300--Sobic006G019700 Sobic010G152400 Sobic010G152400 Sobic006G135300--Sobic010G152400 Sobic003G322100 Sobic003G322100 Sobic006G135300--Sobic003G322100 Sobic006G135300--Sobic004G306900 Sobic002G146000 Sobic002G146000 Sobic006G135300--Sobic002G146000
Octagon: transcription factors


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