Gene annotation
Transcriptome id Sobic.009G105300.2,Sobic.009G105300.1
Synonym Sb09g017110
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A1Z5R242 , C5YWD8
Pfam PF12906 PF12428
Panther DB PTHR23012 PTHR23012:SF90
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT1G02610 : RING/FYVE/PHD zinc finger superfamily protein
RAP-DB (Rice) LOC_Os05g28730.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a043424 , Zm00025a037137
Brachypodium PNT71491 , KQK06759 , KQK04084 , KQK06760
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G054301 - -
2 Sobic.009G162700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@exostosin family domain containing protein, expressed -
3 Sobic.009G231600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
4 Sobic.005G087200 plant-specific domain TIGR01627 family protein, expressed K18801: glucuronoxylan 4-O-methyltransferase
5 Sobic.001G086050 - -
6 Sobic.002G205500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@CESA9 - cellulose synthase, expressed K10999: cellulose synthase A
7 Sobic.003G387500 IQ calmodulin-binding motif domain containing protein, expressed -
8 Sobic.001G094800 similar to IAA1 protein(PubMedID : 29862293)@"domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsIAA13 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
9 Sobic.007G154300 aspartyl protease family protein("PubMedID : 26759170,PubMedID : 24597475")@aspartic proteinase nepenthesin-1 precursor, putative, expressed -
10 Sobic.001G224300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@-(PubMedID : 28944535)@CESA7 - cellulose synthase, expressed K10999: cellulose synthase A
11 Sobic.003G296400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CESA4 - cellulose synthase, expressed K10999: cellulose synthase A
12 Sobic.010G034800 transferase family protein, putative, expressed -
13 Sobic.002G352000 expressed protein -
14 Sobic.006G144600 ARPC2B, putative, expressed K05758: actin related protein 2/3 complex, subunit 2
15 Sobic.004G176100 expressed protein -
16 Sobic.006G008100 expressed protein -
17 Sobic.005G229100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@leaf senescence related protein, putative, expressed -
18 Sobic.006G036400 zinc finger, C3HC4 type domain containing protein, expressed -
19 Sobic.008G137000 RALFL42 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
20 Sobic.001G406700 expressed protein -


Gene co-expression network
sample Sobic009G105300 Sobic009G105300 Sobic009G054301 Sobic009G054301 Sobic009G105300--Sobic009G054301 Sobic009G162700 Sobic009G162700 Sobic009G105300--Sobic009G162700 Sobic009G231600 Sobic009G231600 Sobic009G105300--Sobic009G231600 Sobic005G087200 Sobic005G087200 Sobic009G105300--Sobic005G087200 Sobic001G086050 Sobic001G086050 Sobic009G105300--Sobic001G086050 Sobic002G205500 Sobic002G205500 Sobic009G105300--Sobic002G205500 Sobic003G387500 Sobic003G387500 Sobic009G105300--Sobic003G387500 Sobic001G094800 Sobic001G094800 Sobic009G105300--Sobic001G094800 Sobic007G154300 Sobic007G154300 Sobic009G105300--Sobic007G154300 Sobic009G054301--Sobic009G105300 Sobic009G054301--Sobic009G162700 Sobic009G054301--Sobic007G154300 Sobic009G054301--Sobic003G387500 Sobic004G244600 Sobic004G244600 Sobic009G054301--Sobic004G244600 Sobic001G224300 Sobic001G224300 Sobic009G054301--Sobic001G224300 Sobic009G054301--Sobic005G087200 Sobic006G036400 Sobic006G036400 Sobic009G054301--Sobic006G036400 Sobic002G218900 Sobic002G218900 Sobic009G054301--Sobic002G218900 Sobic009G162700--Sobic003G387500 Sobic006G144600 Sobic006G144600 Sobic009G162700--Sobic006G144600 Sobic001G406700 Sobic001G406700 Sobic009G162700--Sobic001G406700 Sobic010G232500 Sobic010G232500 Sobic009G162700--Sobic010G232500 Sobic002G167600 Sobic002G167600 Sobic009G162700--Sobic002G167600 Sobic009G162700--Sobic002G205500 Sobic009G162700--Sobic001G224300 Sobic008G137000 Sobic008G137000 Sobic009G162700--Sobic008G137000 Sobic002G352000 Sobic002G352000 Sobic009G162700--Sobic002G352000 Sobic009G231600--Sobic001G086050 Sobic003G348900 Sobic003G348900 Sobic009G231600--Sobic003G348900 Sobic010G256600 Sobic010G256600 Sobic009G231600--Sobic010G256600 Sobic009G231600--Sobic009G105300 Sobic003G119200 Sobic003G119200 Sobic009G231600--Sobic003G119200 Sobic006G112000 Sobic006G112000 Sobic009G231600--Sobic006G112000 Sobic006G205800 Sobic006G205800 Sobic009G231600--Sobic006G205800 Sobic002G325200 Sobic002G325200 Sobic009G231600--Sobic002G325200 Sobic006G094800 Sobic006G094800 Sobic009G231600--Sobic006G094800 Sobic005G087200--Sobic003G387500 Sobic009G226900 Sobic009G226900 Sobic005G087200--Sobic009G226900 Sobic002G164600 Sobic002G164600 Sobic005G087200--Sobic002G164600 Sobic003G236701 Sobic003G236701 Sobic005G087200--Sobic003G236701 Sobic003G112200 Sobic003G112200 Sobic005G087200--Sobic003G112200 Sobic001G336700 Sobic001G336700 Sobic005G087200--Sobic001G336700 Sobic005G087200--Sobic001G406700 Sobic009G241600 Sobic009G241600 Sobic005G087200--Sobic009G241600 Sobic008G112200 Sobic008G112200 Sobic005G087200--Sobic008G112200 Sobic001G086050--Sobic009G231600 Sobic001G086050--Sobic003G119200 Sobic008G017300 Sobic008G017300 Sobic001G086050--Sobic008G017300 Sobic007G078200 Sobic007G078200 Sobic001G086050--Sobic007G078200 Sobic004G270900 Sobic004G270900 Sobic001G086050--Sobic004G270900 Sobic002G215866 Sobic002G215866 Sobic001G086050--Sobic002G215866 Sobic006G232100 Sobic006G232100 Sobic001G086050--Sobic006G232100 Sobic008G095200 Sobic008G095200 Sobic001G086050--Sobic008G095200 Sobic001G086050--Sobic009G105300 Sobic003G296400 Sobic003G296400 Sobic002G205500--Sobic003G296400 Sobic002G205500--Sobic001G224300 Sobic007G223600 Sobic007G223600 Sobic002G205500--Sobic007G223600 Sobic006G226200 Sobic006G226200 Sobic002G205500--Sobic006G226200 Sobic005G229100 Sobic005G229100 Sobic002G205500--Sobic005G229100 Sobic002G205500--Sobic003G387500 Sobic009G048000 Sobic009G048000 Sobic002G205500--Sobic009G048000 Sobic002G205500--Sobic006G036400 Sobic002G205500--Sobic009G226900 Sobic003G387500--Sobic001G406700 Sobic003G387500--Sobic006G144600 Sobic003G387500--Sobic001G224300 Sobic003G387500--Sobic010G232500 Sobic003G387500--Sobic002G167600 Sobic009G170500 Sobic009G170500 Sobic003G387500--Sobic009G170500 Sobic003G387500--Sobic009G162700 Sobic003G387500--Sobic002G205500 Sobic003G387500--Sobic009G226900 Sobic008G137300 Sobic008G137300 Sobic001G094800--Sobic008G137300 Sobic002G218800 Sobic002G218800 Sobic001G094800--Sobic002G218800 Sobic004G348500 Sobic004G348500 Sobic001G094800--Sobic004G348500 Sobic003G390500 Sobic003G390500 Sobic001G094800--Sobic003G390500 Sobic002G356500 Sobic002G356500 Sobic001G094800--Sobic002G356500 Sobic004G046400 Sobic004G046400 Sobic001G094800--Sobic004G046400 Sobic003G212300 Sobic003G212300 Sobic001G094800--Sobic003G212300 Sobic004G089100 Sobic004G089100 Sobic001G094800--Sobic004G089100 Sobic003G121100 Sobic003G121100 Sobic001G094800--Sobic003G121100 Sobic007G154300--Sobic009G162700 Sobic007G154300--Sobic009G054301 Sobic009G034300 Sobic009G034300 Sobic007G154300--Sobic009G034300 Sobic007G154300--Sobic002G218900 Sobic007G154300--Sobic006G036400 Sobic007G154300--Sobic005G087200 Sobic007G154300--Sobic003G387500 Sobic007G154300--Sobic006G144600 Sobic007G154300--Sobic001G224300
Octagon: transcription factors


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