Gene annotation
Transcriptome id Sobic.008G137000.1
Synonym
Functional annotation RALFL42 - Rapid ALkalinization Factor RALF family protein precursor, expressed
UniProt A0A1B6PDJ6
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os12g38340.1 : RALFL42 - Rapid ALkalinization Factor RALF family protein precursor, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G229100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@leaf senescence related protein, putative, expressed -
2 Sobic.001G406700 expressed protein -
3 Sobic.009G078900 GDSL-like lipase/acylhydrolase, putative, expressed -
4 Sobic.006G144600 ARPC2B, putative, expressed K05758: actin related protein 2/3 complex, subunit 2
5 Sobic.009G162700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@exostosin family domain containing protein, expressed -
6 Sobic.001G399200 kinesin motor domain containing protein, expressed K10406: kinesin family member C2/C3
7 Sobic.003G387500 IQ calmodulin-binding motif domain containing protein, expressed -
8 Sobic.008G107600 expressed protein -
9 Sobic.001G362100 nodulation protein-related, putative, expressed -
10 Sobic.008G112200 Expressed in middle stem(PubMedID : 28649278)@myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
11 Sobic.010G232500 peroxidase precursor, putative, expressed K00430: peroxidase
12 Sobic.006G209300 transferase family domain containing protein, expressed -
13 Sobic.002G164600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@microtubule-associated protein, putative, expressed -
14 Sobic.003G236701 - -
15 Sobic.010G179900 transferase family protein, putative, expressed -
16 Sobic.002G205500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@CESA9 - cellulose synthase, expressed K10999: cellulose synthase A
17 Sobic.007G223600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
18 Sobic.007G018100 no apical meristem protein, putative, expressed -
19 Sobic.009G048000 villin, putative, expressed K08017: advillin
20 Sobic.009G226900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin-responsive protein, putative, expressed -


Gene co-expression network
sample Sobic008G137000 Sobic008G137000 Sobic005G229100 Sobic005G229100 Sobic008G137000--Sobic005G229100 Sobic001G406700 Sobic001G406700 Sobic008G137000--Sobic001G406700 Sobic009G078900 Sobic009G078900 Sobic008G137000--Sobic009G078900 Sobic006G144600 Sobic006G144600 Sobic008G137000--Sobic006G144600 Sobic009G162700 Sobic009G162700 Sobic008G137000--Sobic009G162700 Sobic001G399200 Sobic001G399200 Sobic008G137000--Sobic001G399200 Sobic003G387500 Sobic003G387500 Sobic008G137000--Sobic003G387500 Sobic008G107600 Sobic008G107600 Sobic008G137000--Sobic008G107600 Sobic001G362100 Sobic001G362100 Sobic008G137000--Sobic001G362100 Sobic007G223600 Sobic007G223600 Sobic005G229100--Sobic007G223600 Sobic010G232500 Sobic010G232500 Sobic005G229100--Sobic010G232500 Sobic002G205500 Sobic002G205500 Sobic005G229100--Sobic002G205500 Sobic005G229100--Sobic006G144600 Sobic005G229100--Sobic001G406700 Sobic002G164600 Sobic002G164600 Sobic005G229100--Sobic002G164600 Sobic006G226200 Sobic006G226200 Sobic005G229100--Sobic006G226200 Sobic005G229100--Sobic003G387500 Sobic005G229100--Sobic001G399200 Sobic001G406700--Sobic003G387500 Sobic001G406700--Sobic006G144600 Sobic001G406700--Sobic001G399200 Sobic009G170500 Sobic009G170500 Sobic001G406700--Sobic009G170500 Sobic001G406700--Sobic010G232500 Sobic002G167600 Sobic002G167600 Sobic001G406700--Sobic002G167600 Sobic001G406700--Sobic005G229100 Sobic007G119500 Sobic007G119500 Sobic001G406700--Sobic007G119500 Sobic009G246700 Sobic009G246700 Sobic001G406700--Sobic009G246700 Sobic009G078900--Sobic008G137000 Sobic010G104400 Sobic010G104400 Sobic009G078900--Sobic010G104400 Sobic001G451800 Sobic001G451800 Sobic009G078900--Sobic001G451800 Sobic009G078900--Sobic001G406700 Sobic009G078900--Sobic008G107600 Sobic003G420100 Sobic003G420100 Sobic009G078900--Sobic003G420100 Sobic009G078900--Sobic001G399200 Sobic003G270400 Sobic003G270400 Sobic009G078900--Sobic003G270400 Sobic003G132500 Sobic003G132500 Sobic009G078900--Sobic003G132500 Sobic006G144600--Sobic001G406700 Sobic006G144600--Sobic010G232500 Sobic006G144600--Sobic003G387500 Sobic006G144600--Sobic002G167600 Sobic006G144600--Sobic009G170500 Sobic006G144600--Sobic001G399200 Sobic006G144600--Sobic005G229100 Sobic006G144600--Sobic007G119500 Sobic006G144600--Sobic007G223600 Sobic009G162700--Sobic003G387500 Sobic009G162700--Sobic006G144600 Sobic009G162700--Sobic001G406700 Sobic009G162700--Sobic010G232500 Sobic009G162700--Sobic002G167600 Sobic009G162700--Sobic002G205500 Sobic001G224300 Sobic001G224300 Sobic009G162700--Sobic001G224300 Sobic009G162700--Sobic008G137000 Sobic002G352000 Sobic002G352000 Sobic009G162700--Sobic002G352000 Sobic001G399200--Sobic001G406700 Sobic001G399200--Sobic006G144600 Sobic001G399200--Sobic010G232500 Sobic001G399200--Sobic003G387500 Sobic001G399200--Sobic005G229100 Sobic001G399200--Sobic001G362100 Sobic001G399200--Sobic007G223600 Sobic001G399200--Sobic006G226200 Sobic001G399200--Sobic009G170500 Sobic003G387500--Sobic001G406700 Sobic003G387500--Sobic006G144600 Sobic003G387500--Sobic001G224300 Sobic003G387500--Sobic010G232500 Sobic003G387500--Sobic002G167600 Sobic003G387500--Sobic009G170500 Sobic003G387500--Sobic009G162700 Sobic003G387500--Sobic002G205500 Sobic009G226900 Sobic009G226900 Sobic003G387500--Sobic009G226900 Sobic003G184500 Sobic003G184500 Sobic008G107600--Sobic003G184500 Sobic008G107600--Sobic010G104400 Sobic008G107600--Sobic009G078900 Sobic001G399400 Sobic001G399400 Sobic008G107600--Sobic001G399400 Sobic008G107600--Sobic008G137000 Sobic001G403200 Sobic001G403200 Sobic008G107600--Sobic001G403200 Sobic004G077100 Sobic004G077100 Sobic008G107600--Sobic004G077100 Sobic002G184800 Sobic002G184800 Sobic008G107600--Sobic002G184800 Sobic004G323100 Sobic004G323100 Sobic008G107600--Sobic004G323100 Sobic001G362100--Sobic001G399200 Sobic001G362100--Sobic001G406700 Sobic001G362100--Sobic010G232500 Sobic001G362100--Sobic003G387500 Sobic009G048000 Sobic009G048000 Sobic001G362100--Sobic009G048000 Sobic003G231500 Sobic003G231500 Sobic001G362100--Sobic003G231500 Sobic006G209300 Sobic006G209300 Sobic001G362100--Sobic006G209300 Sobic001G362100--Sobic006G144600 Sobic001G362100--Sobic006G226200
Octagon: transcription factors


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