Gene annotation
Transcriptome id Sobic.003G276500.1
Synonym VDAC1, ATVDAC1, Sb03g032840
Functional annotation outer mitochondrial membrane porin, putative, expressed
UniProt C5XIA4
Pfam PF01459
Panther DB PTHR11743 PTHR11743:SF30
NCBI CDD KOG3126; Porin/voltage-dependent anion-selective channel protein
KEGG Orthology K15040; voltage-dependent anion channel protein 2
Gene Ontology GO:0005741; mitochondrial outer membrane


Orthologs (automatic annotation)
TAIR AT3G01280 : voltage dependent anion channel 1
RAP-DB (Rice) LOC_Os01g51770.1 : outer mitochondrial membrane porin, putative, expressed
MaizeGDB (Corn) Zm00025a027788
Brachypodium -
Barley -
Wheat TraesCS5A02G193700 , TraesCS5B02G189000 , TraesCS5D02G196100
Populus -


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cDNA sequences
Sobic.003G276500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G375100 snRK1-interacting protein 1, putative, expressed -
2 Sobic.002G136600 expressed protein -
3 Sobic.010G101100 E2F family transcription factor protein, putative, expressed -
4 Sobic.003G125332 - K19347: SUN domain-containing protein 1/2
5 Sobic.002G074200 ribosomal protein, putative, expressed K02981: RP-S2e, small subunit ribosomal protein S2e
6 Sobic.009G042500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
7 Sobic.001G296000 expressed protein -
8 Sobic.009G080300 uncharacterized protein KIAA1310, putative, expressed K07020: uncharacterized protein
9 Sobic.010G085000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.006G062433 - -
11 Sobic.004G315300 DNA-3-methyladenine glycosylase, putative, expressed K03652: DNA-3-methyladenine glycosylase
12 Sobic.003G174700 expressed protein -
13 Sobic.003G034600 CAMK_CAMK_like_Aur_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other
14 Sobic.001G289200 expressed protein -
15 Sobic.007G024500 zinc finger family protein, putative, expressed -
16 Sobic.006G031400 expressed protein -
17 Sobic.004G217450 - -
18 Sobic.006G190600 heavy metal-associated domain containing protein, expressed -
19 Sobic.006G155800 hus1-like protein, expressed K10903: HUS1 checkpoint protein
20 Sobic.006G081800 histone H3, putative, expressed K11253: histone H3


Gene co-expression network
sample Sobic003G276500 Sobic003G276500 Sobic003G375100 Sobic003G375100 Sobic003G276500--Sobic003G375100 Sobic002G136600 Sobic002G136600 Sobic003G276500--Sobic002G136600 Sobic010G101100 Sobic010G101100 Sobic003G276500--Sobic010G101100 Sobic003G125332 Sobic003G125332 Sobic003G276500--Sobic003G125332 Sobic002G074200 Sobic002G074200 Sobic003G276500--Sobic002G074200 Sobic009G042500 Sobic009G042500 Sobic003G276500--Sobic009G042500 Sobic001G296000 Sobic001G296000 Sobic003G276500--Sobic001G296000 Sobic009G080300 Sobic009G080300 Sobic003G276500--Sobic009G080300 Sobic010G085000 Sobic010G085000 Sobic003G276500--Sobic010G085000 Sobic003G375100--Sobic002G136600 Sobic003G375100--Sobic003G276500 Sobic010G054300 Sobic010G054300 Sobic003G375100--Sobic010G054300 Sobic010G082850 Sobic010G082850 Sobic003G375100--Sobic010G082850 Sobic004G252100 Sobic004G252100 Sobic003G375100--Sobic004G252100 Sobic003G375100--Sobic002G074200 Sobic003G289601 Sobic003G289601 Sobic003G375100--Sobic003G289601 Sobic003G310600 Sobic003G310600 Sobic003G375100--Sobic003G310600 Sobic001G162800 Sobic001G162800 Sobic003G375100--Sobic001G162800 Sobic002G136600--Sobic002G074200 Sobic002G136600--Sobic003G375100 Sobic004G170500 Sobic004G170500 Sobic002G136600--Sobic004G170500 Sobic002G136600--Sobic004G252100 Sobic001G529400 Sobic001G529400 Sobic002G136600--Sobic001G529400 Sobic002G136600--Sobic003G125332 Sobic002G136600--Sobic003G276500 Sobic007G195800 Sobic007G195800 Sobic002G136600--Sobic007G195800 Sobic002G136600--Sobic010G101100 Sobic004G217450 Sobic004G217450 Sobic010G101100--Sobic004G217450 Sobic006G031400 Sobic006G031400 Sobic010G101100--Sobic006G031400 Sobic002G385400 Sobic002G385400 Sobic010G101100--Sobic002G385400 Sobic003G034600 Sobic003G034600 Sobic010G101100--Sobic003G034600 Sobic003G279100 Sobic003G279100 Sobic010G101100--Sobic003G279100 Sobic003G345700 Sobic003G345700 Sobic010G101100--Sobic003G345700 Sobic010G101100--Sobic003G125332 Sobic010G101100--Sobic003G276500 Sobic010G101100--Sobic002G074200 Sobic003G125332--Sobic002G136600 Sobic003G125332--Sobic003G034600 Sobic003G125332--Sobic010G101100 Sobic003G125332--Sobic002G074200 Sobic001G531300 Sobic001G531300 Sobic003G125332--Sobic001G531300 Sobic003G125332--Sobic003G276500 Sobic006G190600 Sobic006G190600 Sobic003G125332--Sobic006G190600 Sobic001G475500 Sobic001G475500 Sobic003G125332--Sobic001G475500 Sobic005G142500 Sobic005G142500 Sobic003G125332--Sobic005G142500 Sobic005G080900 Sobic005G080900 Sobic002G074200--Sobic005G080900 Sobic003G160700 Sobic003G160700 Sobic002G074200--Sobic003G160700 Sobic002G372400 Sobic002G372400 Sobic002G074200--Sobic002G372400 Sobic006G159600 Sobic006G159600 Sobic002G074200--Sobic006G159600 Sobic006G067800 Sobic006G067800 Sobic002G074200--Sobic006G067800 Sobic003G078200 Sobic003G078200 Sobic002G074200--Sobic003G078200 Sobic003G436700 Sobic003G436700 Sobic002G074200--Sobic003G436700 Sobic010G076400 Sobic010G076400 Sobic002G074200--Sobic010G076400 Sobic006G137800 Sobic006G137800 Sobic002G074200--Sobic006G137800 Sobic003G202700 Sobic003G202700 Sobic009G042500--Sobic003G202700 Sobic001G200600 Sobic001G200600 Sobic009G042500--Sobic001G200600 Sobic003G433600 Sobic003G433600 Sobic009G042500--Sobic003G433600 Sobic006G266000 Sobic006G266000 Sobic009G042500--Sobic006G266000 Sobic001G226200 Sobic001G226200 Sobic009G042500--Sobic001G226200 Sobic010G067000 Sobic010G067000 Sobic009G042500--Sobic010G067000 Sobic004G250100 Sobic004G250100 Sobic009G042500--Sobic004G250100 Sobic010G066900 Sobic010G066900 Sobic009G042500--Sobic010G066900 Sobic002G292400 Sobic002G292400 Sobic009G042500--Sobic002G292400 Sobic009G120700 Sobic009G120700 Sobic001G296000--Sobic009G120700 Sobic001G296000--Sobic006G031400 Sobic001G091500 Sobic001G091500 Sobic001G296000--Sobic001G091500 Sobic002G426800 Sobic002G426800 Sobic001G296000--Sobic002G426800 Sobic002G113600 Sobic002G113600 Sobic001G296000--Sobic002G113600 Sobic005G164900 Sobic005G164900 Sobic001G296000--Sobic005G164900 Sobic004G132900 Sobic004G132900 Sobic001G296000--Sobic004G132900 Sobic001G088000 Sobic001G088000 Sobic001G296000--Sobic001G088000 Sobic001G230300 Sobic001G230300 Sobic001G296000--Sobic001G230300 Sobic003G396600 Sobic003G396600 Sobic009G080300--Sobic003G396600 Sobic009G088200 Sobic009G088200 Sobic009G080300--Sobic009G088200 Sobic003G300900 Sobic003G300900 Sobic009G080300--Sobic003G300900 Sobic010G115200 Sobic010G115200 Sobic009G080300--Sobic010G115200 Sobic009G109300 Sobic009G109300 Sobic009G080300--Sobic009G109300 Sobic009G080300--Sobic004G170500 Sobic006G134900 Sobic006G134900 Sobic009G080300--Sobic006G134900 Sobic004G355500 Sobic004G355500 Sobic009G080300--Sobic004G355500 Sobic002G280700 Sobic002G280700 Sobic009G080300--Sobic002G280700 Sobic010G085000--Sobic009G042500 Sobic002G088800 Sobic002G088800 Sobic010G085000--Sobic002G088800 Sobic010G085000--Sobic003G375100 Sobic010G085000--Sobic003G276500 Sobic004G028400 Sobic004G028400 Sobic010G085000--Sobic004G028400 Sobic010G085000--Sobic001G200600 Sobic010G085000--Sobic002G136600 Sobic008G149200 Sobic008G149200 Sobic010G085000--Sobic008G149200 Sobic010G085000--Sobic004G250100
Octagon: transcription factors


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