Gene annotation
Transcriptome id Sobic.004G315300.1
Synonym Sb04g034700
Functional annotation DNA-3-methyladenine glycosylase, putative, expressed
UniProt C5XTJ3
Pfam PF02245
Panther DB PTHR10429 PTHR10429:SF0
NCBI CDD KOG4486; 3-methyladenine DNA glycosylase
KEGG Orthology K03652; DNA-3-methyladenine glycosylase
Gene Ontology GO:0006284; base-excision repair GO:0003905alkylbase DNA N-glycosylase activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT3G12040 : DNA-3-methyladenine glycosylase (MAG)
RAP-DB (Rice) LOC_Os02g53430.1 : DNA-3-methyladenine glycosylase, putative, expressed
MaizeGDB (Corn) Zm00025a022293
Brachypodium KQK01666 , KQK01665
Barley HORVU6Hr1G078890.8 , HORVU6Hr1G078890.9 , HORVU6Hr1G078890.2 , HORVU6Hr1G078890.3 , HORVU6Hr1G078890.4 , HORVU6Hr1G078890.5 , HORVU6Hr1G078890.6 , HORVU6Hr1G078890.7 , HORVU6Hr1G078890.12 , HORVU6Hr1G078890.13 , HORVU6Hr1G078890.10 , HORVU6Hr1G078890.16 , HORVU6Hr1G078890.17 , HORVU6Hr1G078890.14 , HORVU6Hr1G078890.1 , HORVU6Hr1G078890.18 , HORVU6Hr1G078890.15
Wheat TraesCS6A02G322600 , TraesCS6D02G302500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G058400 Superior methylation activity against resveratrol compared with that of sbOMT3(PubMedID : 25033820)@O-methyltransferase, putative, expressed -
2 Sobic.001G031700 nucleobase-ascorbate transporter, putative, expressed -
3 Sobic.003G289601 - -
4 Sobic.002G123500 dehydrodolichyl diphosphate synthase, putative, expressed K11778: DHDDS, RER2, ditrans,polycis-polyprenyl diphosphate synthase
5 Sobic.006G261900 expressed protein -
6 Sobic.002G074200 ribosomal protein, putative, expressed K02981: RP-S2e, small subunit ribosomal protein S2e
7 Sobic.007G029400 60S acidic ribosomal protein P0, putative, expressed K02941: RP-LP0, large subunit ribosomal protein LP0
8 Sobic.005G080900 expressed protein -
9 Sobic.009G021600 Jacalin-like lectin domain containing protein, putative, expressed -
10 Sobic.009G173500 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e
11 Sobic.006G198700 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
12 Sobic.010G076400 40S ribosomal protein S17, putative, expressed K02962: RP-S17e, small subunit ribosomal protein S17e
13 Sobic.009G223300 WD repeat-containing protein, putative, expressed K14753: guanine nucleotide-binding protein subunit beta-2-like 1 protein
14 Sobic.003G109600 40S ribosomal protein S5, putative, expressed K02989: RP-S5e, small subunit ribosomal protein S5e
15 Sobic.006G067800 60S acidic ribosomal protein, putative, expressed K02943: RP-LP2, large subunit ribosomal protein LP2
16 Sobic.002G379500 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
17 Sobic.001G295200 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
18 Sobic.002G372400 60S ribosomal protein, putative, expressed K02900: RP-L27Ae, large subunit ribosomal protein L27Ae
19 Sobic.003G034600 CAMK_CAMK_like_Aur_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other
20 Sobic.003G399700 LTPL38 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -


Gene co-expression network
sample Sobic004G315300 Sobic004G315300 Sobic007G058400 Sobic007G058400 Sobic004G315300--Sobic007G058400 Sobic001G031700 Sobic001G031700 Sobic004G315300--Sobic001G031700 Sobic003G289601 Sobic003G289601 Sobic004G315300--Sobic003G289601 Sobic002G123500 Sobic002G123500 Sobic004G315300--Sobic002G123500 Sobic006G261900 Sobic006G261900 Sobic004G315300--Sobic006G261900 Sobic002G074200 Sobic002G074200 Sobic004G315300--Sobic002G074200 Sobic007G029400 Sobic007G029400 Sobic004G315300--Sobic007G029400 Sobic005G080900 Sobic005G080900 Sobic004G315300--Sobic005G080900 Sobic009G021600 Sobic009G021600 Sobic004G315300--Sobic009G021600 Sobic004G229400 Sobic004G229400 Sobic007G058400--Sobic004G229400 Sobic003G427800 Sobic003G427800 Sobic007G058400--Sobic003G427800 Sobic007G017500 Sobic007G017500 Sobic007G058400--Sobic007G017500 Sobic007G058400--Sobic001G031700 Sobic004G229500 Sobic004G229500 Sobic007G058400--Sobic004G229500 Sobic005G013500 Sobic005G013500 Sobic007G058400--Sobic005G013500 Sobic006G075400 Sobic006G075400 Sobic007G058400--Sobic006G075400 Sobic009G205500 Sobic009G205500 Sobic007G058400--Sobic009G205500 Sobic002G351300 Sobic002G351300 Sobic007G058400--Sobic002G351300 Sobic004G041900 Sobic004G041900 Sobic001G031700--Sobic004G041900 Sobic001G031700--Sobic007G017500 Sobic001G031700--Sobic006G075400 Sobic001G295200 Sobic001G295200 Sobic001G031700--Sobic001G295200 Sobic001G031700--Sobic007G058400 Sobic003G432700 Sobic003G432700 Sobic001G031700--Sobic003G432700 Sobic010G221300 Sobic010G221300 Sobic001G031700--Sobic010G221300 Sobic004G294400 Sobic004G294400 Sobic001G031700--Sobic004G294400 Sobic001G313600 Sobic001G313600 Sobic001G031700--Sobic001G313600 Sobic003G289601--Sobic006G261900 Sobic007G184001 Sobic007G184001 Sobic003G289601--Sobic007G184001 Sobic001G047800 Sobic001G047800 Sobic003G289601--Sobic001G047800 Sobic006G262300 Sobic006G262300 Sobic003G289601--Sobic006G262300 Sobic003G296800 Sobic003G296800 Sobic003G289601--Sobic003G296800 Sobic009G173500 Sobic009G173500 Sobic003G289601--Sobic009G173500 Sobic002G329900 Sobic002G329900 Sobic003G289601--Sobic002G329900 Sobic009G223300 Sobic009G223300 Sobic003G289601--Sobic009G223300 Sobic002G309700 Sobic002G309700 Sobic003G289601--Sobic002G309700 Sobic001G430100 Sobic001G430100 Sobic002G123500--Sobic001G430100 Sobic003G405300 Sobic003G405300 Sobic002G123500--Sobic003G405300 Sobic003G311800 Sobic003G311800 Sobic002G123500--Sobic003G311800 Sobic003G399700 Sobic003G399700 Sobic002G123500--Sobic003G399700 Sobic003G070500 Sobic003G070500 Sobic002G123500--Sobic003G070500 Sobic006G157900 Sobic006G157900 Sobic002G123500--Sobic006G157900 Sobic006G274933 Sobic006G274933 Sobic002G123500--Sobic006G274933 Sobic002G183700 Sobic002G183700 Sobic002G123500--Sobic002G183700 Sobic006G235200 Sobic006G235200 Sobic002G123500--Sobic006G235200 Sobic006G261900--Sobic006G262300 Sobic003G436700 Sobic003G436700 Sobic006G261900--Sobic003G436700 Sobic002G379500 Sobic002G379500 Sobic006G261900--Sobic002G379500 Sobic003G109600 Sobic003G109600 Sobic006G261900--Sobic003G109600 Sobic010G251600 Sobic010G251600 Sobic006G261900--Sobic010G251600 Sobic006G213000 Sobic006G213000 Sobic006G261900--Sobic006G213000 Sobic002G081600 Sobic002G081600 Sobic006G261900--Sobic002G081600 Sobic006G261900--Sobic009G173500 Sobic001G016500 Sobic001G016500 Sobic006G261900--Sobic001G016500 Sobic002G074200--Sobic005G080900 Sobic003G160700 Sobic003G160700 Sobic002G074200--Sobic003G160700 Sobic002G372400 Sobic002G372400 Sobic002G074200--Sobic002G372400 Sobic006G159600 Sobic006G159600 Sobic002G074200--Sobic006G159600 Sobic006G067800 Sobic006G067800 Sobic002G074200--Sobic006G067800 Sobic003G078200 Sobic003G078200 Sobic002G074200--Sobic003G078200 Sobic002G074200--Sobic003G436700 Sobic010G076400 Sobic010G076400 Sobic002G074200--Sobic010G076400 Sobic006G137800 Sobic006G137800 Sobic002G074200--Sobic006G137800 Sobic005G050500 Sobic005G050500 Sobic007G029400--Sobic005G050500 Sobic001G039400 Sobic001G039400 Sobic007G029400--Sobic001G039400 Sobic009G179100 Sobic009G179100 Sobic007G029400--Sobic009G179100 Sobic007G029400--Sobic003G109600 Sobic002G304900 Sobic002G304900 Sobic007G029400--Sobic002G304900 Sobic009G233400 Sobic009G233400 Sobic007G029400--Sobic009G233400 Sobic007G029400--Sobic009G223300 Sobic010G069400 Sobic010G069400 Sobic007G029400--Sobic010G069400 Sobic004G349700 Sobic004G349700 Sobic007G029400--Sobic004G349700 Sobic005G080900--Sobic003G436700 Sobic005G080900--Sobic003G109600 Sobic004G252100 Sobic004G252100 Sobic005G080900--Sobic004G252100 Sobic005G080900--Sobic002G379500 Sobic005G080900--Sobic006G067800 Sobic009G101700 Sobic009G101700 Sobic005G080900--Sobic009G101700 Sobic005G080900--Sobic006G261900 Sobic005G080900--Sobic001G016500 Sobic002G286900 Sobic002G286900 Sobic005G080900--Sobic002G286900 Sobic010G184800 Sobic010G184800 Sobic009G021600--Sobic010G184800 Sobic009G152600 Sobic009G152600 Sobic009G021600--Sobic009G152600 Sobic008G186100 Sobic008G186100 Sobic009G021600--Sobic008G186100 Sobic009G021600--Sobic001G031700 Sobic001G304100 Sobic001G304100 Sobic009G021600--Sobic001G304100 Sobic006G234800 Sobic006G234800 Sobic009G021600--Sobic006G234800 Sobic010G029700 Sobic010G029700 Sobic009G021600--Sobic010G029700 Sobic002G250000 Sobic002G250000 Sobic009G021600--Sobic002G250000 Sobic001G302600 Sobic001G302600 Sobic009G021600--Sobic001G302600
Octagon: transcription factors


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