Gene annotation
Transcriptome id Sobic.002G123500.1,Sobic.002G123500.3,Sobic.002G123500.2
Synonym Sb02g010690
Functional annotation dehydrodolichyl diphosphate synthase, putative, expressed
UniProt A0A1W0W3H3 , A0A1B6QAU0
Pfam PF01255
Panther DB PTHR10291 PTHR10291:SF6
NCBI CDD KOG1602; Cis-prenyltransferase
KEGG Orthology K11778; DHDDS, RER2, ditrans,polycis-polyprenyl diphosphate synthase
Gene Ontology GO:0016765; transferase activity, transferring alkyl or aryl (other than methyl) groups


Orthologs (automatic annotation)
TAIR AT5G58770 : Undecaprenyl pyrophosphate synthetase family protein
RAP-DB (Rice) LOC_Os01g63830.1 : dehydrodolichyl diphosphate synthase, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK10656
Barley HORVU4Hr1G090410.4 , HORVU4Hr1G090410.1 , HORVU4Hr1G090410.2 , HORVU4Hr1G090410.3
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G430100 - -
2 Sobic.003G405300 regulatory protein, putative, expressed -
3 Sobic.003G311800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@xylosyltransferase, putative, expressed -
4 Sobic.003G399700 LTPL38 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
5 Sobic.003G070500 expressed protein -
6 Sobic.006G157900 C2 domain containing protein, putative, expressed -
7 Sobic.006G274933 - -
8 Sobic.002G183700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@L-ascorbate oxidase precursor, putative, expressed -
9 Sobic.006G235200 expressed protein -
10 Sobic.003G411200 CRAL/TRIO domain containing protein, expressed -
11 Sobic.001G049900 UDP-rhamnose rhamnosyltransferase, putative, expressed -
12 Sobic.004G297900 plastocyanin-like domain containing protein, putative, expressed -
13 Sobic.007G058400 Superior methylation activity against resveratrol compared with that of sbOMT3(PubMedID : 25033820)@O-methyltransferase, putative, expressed -
14 Sobic.002G085900 expressed protein -
15 Sobic.001G231900 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
16 Sobic.001G302600 LTPL147 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
17 Sobic.003G299300 expressed protein -
18 Sobic.001G300500 expansin precursor, putative, expressed -
19 Sobic.009G021600 Jacalin-like lectin domain containing protein, putative, expressed -
20 Sobic.009G109000 expressed protein -


Gene co-expression network
sample Sobic002G123500 Sobic002G123500 Sobic001G430100 Sobic001G430100 Sobic002G123500--Sobic001G430100 Sobic003G405300 Sobic003G405300 Sobic002G123500--Sobic003G405300 Sobic003G311800 Sobic003G311800 Sobic002G123500--Sobic003G311800 Sobic003G399700 Sobic003G399700 Sobic002G123500--Sobic003G399700 Sobic003G070500 Sobic003G070500 Sobic002G123500--Sobic003G070500 Sobic006G157900 Sobic006G157900 Sobic002G123500--Sobic006G157900 Sobic006G274933 Sobic006G274933 Sobic002G123500--Sobic006G274933 Sobic002G183700 Sobic002G183700 Sobic002G123500--Sobic002G183700 Sobic006G235200 Sobic006G235200 Sobic002G123500--Sobic006G235200 Sobic001G430100--Sobic002G183700 Sobic001G430100--Sobic003G311800 Sobic007G050200 Sobic007G050200 Sobic001G430100--Sobic007G050200 Sobic001G049900 Sobic001G049900 Sobic001G430100--Sobic001G049900 Sobic002G001700 Sobic002G001700 Sobic001G430100--Sobic002G001700 Sobic004G348800 Sobic004G348800 Sobic001G430100--Sobic004G348800 Sobic004G297900 Sobic004G297900 Sobic001G430100--Sobic004G297900 Sobic006G197100 Sobic006G197100 Sobic001G430100--Sobic006G197100 Sobic009G109000 Sobic009G109000 Sobic001G430100--Sobic009G109000 Sobic003G405300--Sobic002G123500 Sobic003G405300--Sobic003G399700 Sobic005G110406 Sobic005G110406 Sobic003G405300--Sobic005G110406 Sobic003G405300--Sobic001G430100 Sobic006G277800 Sobic006G277800 Sobic003G405300--Sobic006G277800 Sobic004G029100 Sobic004G029100 Sobic003G405300--Sobic004G029100 Sobic008G068300 Sobic008G068300 Sobic003G405300--Sobic008G068300 Sobic007G090460 Sobic007G090460 Sobic003G405300--Sobic007G090460 Sobic010G088800 Sobic010G088800 Sobic003G405300--Sobic010G088800 Sobic003G311800--Sobic004G297900 Sobic002G003800 Sobic002G003800 Sobic003G311800--Sobic002G003800 Sobic003G311800--Sobic001G049900 Sobic003G311800--Sobic009G109000 Sobic003G311800--Sobic006G197100 Sobic003G311800--Sobic006G274933 Sobic003G311800--Sobic002G183700 Sobic007G090469 Sobic007G090469 Sobic003G311800--Sobic007G090469 Sobic004G042000 Sobic004G042000 Sobic003G311800--Sobic004G042000 Sobic002G234400 Sobic002G234400 Sobic003G399700--Sobic002G234400 Sobic001G231900 Sobic001G231900 Sobic003G399700--Sobic001G231900 Sobic006G172550 Sobic006G172550 Sobic003G399700--Sobic006G172550 Sobic006G198700 Sobic006G198700 Sobic003G399700--Sobic006G198700 Sobic004G292900 Sobic004G292900 Sobic003G399700--Sobic004G292900 Sobic006G172500 Sobic006G172500 Sobic003G399700--Sobic006G172500 Sobic001G302600 Sobic001G302600 Sobic003G399700--Sobic001G302600 Sobic002G250000 Sobic002G250000 Sobic003G399700--Sobic002G250000 Sobic002G219400 Sobic002G219400 Sobic003G399700--Sobic002G219400 Sobic003G070500--Sobic002G123500 Sobic006G227500 Sobic006G227500 Sobic003G070500--Sobic006G227500 Sobic009G221500 Sobic009G221500 Sobic003G070500--Sobic009G221500 Sobic003G070500--Sobic001G430100 Sobic001G062500 Sobic001G062500 Sobic003G070500--Sobic001G062500 Sobic003G070500--Sobic007G050200 Sobic004G323300 Sobic004G323300 Sobic003G070500--Sobic004G323300 Sobic004G209400 Sobic004G209400 Sobic003G070500--Sobic004G209400 Sobic003G070500--Sobic007G090469 Sobic010G001000 Sobic010G001000 Sobic006G157900--Sobic010G001000 Sobic003G366600 Sobic003G366600 Sobic006G157900--Sobic003G366600 Sobic003G007600 Sobic003G007600 Sobic006G157900--Sobic003G007600 Sobic006G103000 Sobic006G103000 Sobic006G157900--Sobic006G103000 Sobic006G157900--Sobic003G311800 Sobic006G157900--Sobic001G302600 Sobic004G202400 Sobic004G202400 Sobic006G157900--Sobic004G202400 Sobic010G270500 Sobic010G270500 Sobic006G157900--Sobic010G270500 Sobic002G336700 Sobic002G336700 Sobic006G157900--Sobic002G336700 Sobic006G274933--Sobic002G183700 Sobic006G274933--Sobic003G311800 Sobic003G269600 Sobic003G269600 Sobic006G274933--Sobic003G269600 Sobic003G140700 Sobic003G140700 Sobic006G274933--Sobic003G140700 Sobic002G361200 Sobic002G361200 Sobic006G274933--Sobic002G361200 Sobic006G274933--Sobic001G062500 Sobic003G399600 Sobic003G399600 Sobic006G274933--Sobic003G399600 Sobic006G225500 Sobic006G225500 Sobic006G274933--Sobic006G225500 Sobic003G121100 Sobic003G121100 Sobic006G274933--Sobic003G121100 Sobic007G158800 Sobic007G158800 Sobic002G183700--Sobic007G158800 Sobic002G183700--Sobic004G029100 Sobic001G502000 Sobic001G502000 Sobic002G183700--Sobic001G502000 Sobic002G183700--Sobic003G140700 Sobic006G089000 Sobic006G089000 Sobic002G183700--Sobic006G089000 Sobic002G183700--Sobic006G274933 Sobic002G183700--Sobic006G225500 Sobic004G322100 Sobic004G322100 Sobic002G183700--Sobic004G322100 Sobic002G183700--Sobic003G311800 Sobic006G235200--Sobic004G297900 Sobic004G295100 Sobic004G295100 Sobic006G235200--Sobic004G295100 Sobic008G009400 Sobic008G009400 Sobic006G235200--Sobic008G009400 Sobic001G300500 Sobic001G300500 Sobic006G235200--Sobic001G300500 Sobic006G235200--Sobic003G311800 Sobic003G299300 Sobic003G299300 Sobic006G235200--Sobic003G299300 Sobic006G235200--Sobic006G172550 Sobic006G235200--Sobic002G183700 Sobic002G092600 Sobic002G092600 Sobic006G235200--Sobic002G092600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.