Gene annotation
| Transcriptome id | Sobic.002G074200.1 |
|---|---|
| Synonym | Sb02g006200 |
| Functional annotation | ribosomal protein, putative, expressed |
| UniProt | C5XCR2 |
| Pfam | PF00333 PF03719 |
| Panther DB | PTHR13718:SF69 PTHR13718 |
| NCBI CDD | KOG0877; 40S ribosomal protein S2/30S ribosomal protein S5 |
| KEGG Orthology | K02981; RP-S2e, small subunit ribosomal protein S2e |
| Gene Ontology | GO:0003723; RNA binding GO:0003735structural constituent of ribosome GO:0005840ribosome GO:0006412translation |
Orthologs (automatic annotation)
| TAIR | AT2G41840 : Ribosomal protein S5 family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os07g10660.1 : ribosomal protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a045372 , Zm00025a016506 , Zm00025a008670 |
| Brachypodium | KQK20398 , KQK12579 |
| Barley | HORVU3Hr1G086050.4 , HORVU3Hr1G086050.1 , HORVU3Hr1G086050.2 , HORVU3Hr1G086050.3 , HORVU5Hr1G109910.5 , HORVU5Hr1G109910.4 , HORVU5Hr1G109910.3 , HORVU5Hr1G109910.2 |
| Wheat | TraesCS3D02G338200 , TraesCS5B02G468500 , TraesCS3B02G376600 , TraesCS5A02G458900 , TraesCS3A02G366100 , TraesCS5D02G470000 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.005G080900 | expressed protein | - |
| 2 | Sobic.003G160700 | RALFL8 - Rapid ALkalinization Factor RALF family protein precursor, expressed | - |
| 3 | Sobic.002G372400 | 60S ribosomal protein, putative, expressed | K02900: RP-L27Ae, large subunit ribosomal protein L27Ae |
| 4 | Sobic.006G159600 | cytochrome b561, putative, expressed | K08360: cytochrome b-561 |
| 5 | Sobic.006G067800 | 60S acidic ribosomal protein, putative, expressed | K02943: RP-LP2, large subunit ribosomal protein LP2 |
| 6 | Sobic.003G078200 | ribosomal protein L24, putative, expressed | K02898: RP-L26e, large subunit ribosomal protein L26e |
| 7 | Sobic.003G436700 | 40S ribosomal protein S10, putative, expressed | K02947: RP-S10e, small subunit ribosomal protein S10e |
| 8 | Sobic.010G076400 | 40S ribosomal protein S17, putative, expressed | K02962: RP-S17e, small subunit ribosomal protein S17e |
| 9 | Sobic.006G137800 | expressed protein | - |
| 10 | Sobic.009G173500 | 40S ribosomal protein S26, putative, expressed | K02976: RP-S26e, small subunit ribosomal protein S26e |
| 11 | Sobic.002G379500 | 40S ribosomal protein S6, putative, expressed | K02991: RP-S6e, small subunit ribosomal protein S6e |
| 12 | Sobic.005G113300 | -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed | K00600: glyA, glycine hydroxymethyltransferase |
| 13 | Sobic.002G348100 | 40S ribosomal protein S13, putative, expressed | K02953: RP-S13e, small subunit ribosomal protein S13e |
| 14 | Sobic.010G028200 | GDP-mannose 4,6 dehydratase 2, putative, expressed | K01711: gmd, GDPmannose 4,6-dehydratase |
| 15 | Sobic.007G197800 | 60S ribosomal protein L32, putative, expressed | K02912: RP-L32e, large subunit ribosomal protein L32e |
| 16 | Sobic.009G054800 | 40S ribosomal protein S27a, putative, expressed | K02977: RP-S27Ae, RPS27A, ubiquitin-small subunit ribosomal protein S27Ae |
| 17 | Sobic.003G125650 | - | K02183: calmodulin |
| 18 | Sobic.004G198400 | 60S ribosomal protein L6, putative, expressed | K02934: RP-L6e, large subunit ribosomal protein L6e |
| 19 | Sobic.004G008400 | ribosomal protein L37, putative, expressed | K02922: RP-L37e, large subunit ribosomal protein L37e |
| 20 | Sobic.009G223300 | WD repeat-containing protein, putative, expressed | K14753: guanine nucleotide-binding protein subunit beta-2-like 1 protein |
Gene co-expression network
Octagon: transcription factors
© 2015- RIKEN, All rights reserved.
