Gene annotation
Transcriptome id Sobic.007G024500.1
Synonym Sb07g002140
Functional annotation zinc finger family protein, putative, expressed
UniProt C5YMI7
Pfam PF13704
Panther DB PTHR21461 PTHR21461:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G27330 : zinc finger (C3HC4-type RING finger) family protein
RAP-DB (Rice) LOC_Os08g02850.1 : zinc finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a030213
Brachypodium KQJ94920 , KQJ94921
Barley HORVU7Hr1G074820.4 , HORVU7Hr1G074820.5 , HORVU7Hr1G074820.6 , HORVU7Hr1G074820.1 , HORVU7Hr1G074820.2 , HORVU7Hr1G074820.3
Wheat TraesCS7B02G214400 , TraesCS7D02G310300 , TraesCS7A02G313700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G136600 expressed protein -
2 Sobic.010G110901 - -
3 Sobic.001G107200 tubulin/FtsZ domain containing protein, putative, expressed K07374: tubulin alpha
4 Sobic.001G363000 uncharacterized protein HI0077, putative, expressed -
5 Sobic.009G165500 Lung seven transmembrane receptor domain containing protein, putative, expressed -
6 Sobic.001G528600 remorin family protein, putative, expressed -
7 Sobic.006G190600 heavy metal-associated domain containing protein, expressed -
8 Sobic.003G125332 - K19347: SUN domain-containing protein 1/2
9 Sobic.003G276500 outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
10 Sobic.002G340500 oligonucleotide/oligosaccharide-binding fold containing 2B, putative, expressed -
11 Sobic.001G412500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K18732: SARNP, CIP29, SAP domain-containing ribonucleoprotein
12 Sobic.002G380000 TRM112, putative, expressed K15448: TRM112, multifunctional methyltransferase subunit TRM112
13 Sobic.002G179150 - -
14 Sobic.001G195000 protein kinase domain containing protein, expressed K04730: interleukin-1 receptor-associated kinase 1
15 Sobic.010G224900 tubulin/FtsZ domain containing protein, putative, expressed K07375: tubulin beta
16 Sobic.002G428400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@membrane associated DUF588 domain containing protein, putative, expressed -
17 Sobic.010G101100 E2F family transcription factor protein, putative, expressed -
18 Sobic.003G084300 mediator of RNA polymerase II transcription subunit 22, putative, expressed K15139: mediator of RNA polymerase II transcription subunit 22
19 Sobic.003G011100 reticulon domain containing protein, putative, expressed -
20 Sobic.004G017100 AGAP001222-PA, putative, expressed -


Gene co-expression network
sample Sobic007G024500 Sobic007G024500 Sobic002G136600 Sobic002G136600 Sobic007G024500--Sobic002G136600 Sobic010G110901 Sobic010G110901 Sobic007G024500--Sobic010G110901 Sobic001G107200 Sobic001G107200 Sobic007G024500--Sobic001G107200 Sobic001G363000 Sobic001G363000 Sobic007G024500--Sobic001G363000 Sobic009G165500 Sobic009G165500 Sobic007G024500--Sobic009G165500 Sobic001G528600 Sobic001G528600 Sobic007G024500--Sobic001G528600 Sobic006G190600 Sobic006G190600 Sobic007G024500--Sobic006G190600 Sobic003G125332 Sobic003G125332 Sobic007G024500--Sobic003G125332 Sobic003G276500 Sobic003G276500 Sobic007G024500--Sobic003G276500 Sobic002G074200 Sobic002G074200 Sobic002G136600--Sobic002G074200 Sobic003G375100 Sobic003G375100 Sobic002G136600--Sobic003G375100 Sobic004G170500 Sobic004G170500 Sobic002G136600--Sobic004G170500 Sobic004G252100 Sobic004G252100 Sobic002G136600--Sobic004G252100 Sobic001G529400 Sobic001G529400 Sobic002G136600--Sobic001G529400 Sobic002G136600--Sobic003G125332 Sobic002G136600--Sobic003G276500 Sobic007G195800 Sobic007G195800 Sobic002G136600--Sobic007G195800 Sobic010G101100 Sobic010G101100 Sobic002G136600--Sobic010G101100 Sobic010G110901--Sobic002G136600 Sobic010G110901--Sobic004G170500 Sobic005G142500 Sobic005G142500 Sobic010G110901--Sobic005G142500 Sobic010G110901--Sobic001G107200 Sobic010G110901--Sobic007G024500 Sobic003G347900 Sobic003G347900 Sobic010G110901--Sobic003G347900 Sobic010G047100 Sobic010G047100 Sobic010G110901--Sobic010G047100 Sobic002G092600 Sobic002G092600 Sobic010G110901--Sobic002G092600 Sobic001G475500 Sobic001G475500 Sobic010G110901--Sobic001G475500 Sobic001G107200--Sobic001G528600 Sobic006G191700 Sobic006G191700 Sobic001G107200--Sobic006G191700 Sobic001G107100 Sobic001G107100 Sobic001G107200--Sobic001G107100 Sobic002G350400 Sobic002G350400 Sobic001G107200--Sobic002G350400 Sobic005G047100 Sobic005G047100 Sobic001G107200--Sobic005G047100 Sobic007G094400 Sobic007G094400 Sobic001G107200--Sobic007G094400 Sobic003G250700 Sobic003G250700 Sobic001G107200--Sobic003G250700 Sobic003G011100 Sobic003G011100 Sobic001G107200--Sobic003G011100 Sobic006G278100 Sobic006G278100 Sobic001G107200--Sobic006G278100 Sobic005G164700 Sobic005G164700 Sobic001G363000--Sobic005G164700 Sobic007G143000 Sobic007G143000 Sobic001G363000--Sobic007G143000 Sobic002G079900 Sobic002G079900 Sobic001G363000--Sobic002G079900 Sobic003G401400 Sobic003G401400 Sobic001G363000--Sobic003G401400 Sobic001G451901 Sobic001G451901 Sobic001G363000--Sobic001G451901 Sobic007G034400 Sobic007G034400 Sobic001G363000--Sobic007G034400 Sobic003G128000 Sobic003G128000 Sobic001G363000--Sobic003G128000 Sobic005G132700 Sobic005G132700 Sobic001G363000--Sobic005G132700 Sobic001G214900 Sobic001G214900 Sobic001G363000--Sobic001G214900 Sobic003G084300 Sobic003G084300 Sobic009G165500--Sobic003G084300 Sobic001G505000 Sobic001G505000 Sobic009G165500--Sobic001G505000 Sobic006G149200 Sobic006G149200 Sobic009G165500--Sobic006G149200 Sobic010G238800 Sobic010G238800 Sobic009G165500--Sobic010G238800 Sobic010G054200 Sobic010G054200 Sobic009G165500--Sobic010G054200 Sobic001G429000 Sobic001G429000 Sobic009G165500--Sobic001G429000 Sobic008G135000 Sobic008G135000 Sobic009G165500--Sobic008G135000 Sobic001G412500 Sobic001G412500 Sobic009G165500--Sobic001G412500 Sobic006G201500 Sobic006G201500 Sobic009G165500--Sobic006G201500 Sobic001G078600 Sobic001G078600 Sobic001G528600--Sobic001G078600 Sobic001G528600--Sobic001G107200 Sobic002G280700 Sobic002G280700 Sobic001G528600--Sobic002G280700 Sobic004G152200 Sobic004G152200 Sobic001G528600--Sobic004G152200 Sobic001G528600--Sobic006G191700 Sobic010G274000 Sobic010G274000 Sobic001G528600--Sobic010G274000 Sobic004G331200 Sobic004G331200 Sobic001G528600--Sobic004G331200 Sobic001G528600--Sobic005G047100 Sobic006G102900 Sobic006G102900 Sobic001G528600--Sobic006G102900 Sobic001G481000 Sobic001G481000 Sobic006G190600--Sobic001G481000 Sobic003G117500 Sobic003G117500 Sobic006G190600--Sobic003G117500 Sobic001G304300 Sobic001G304300 Sobic006G190600--Sobic001G304300 Sobic006G190600--Sobic005G142500 Sobic001G295800 Sobic001G295800 Sobic006G190600--Sobic001G295800 Sobic002G350500 Sobic002G350500 Sobic006G190600--Sobic002G350500 Sobic003G321200 Sobic003G321200 Sobic006G190600--Sobic003G321200 Sobic005G004700 Sobic005G004700 Sobic006G190600--Sobic005G004700 Sobic002G247800 Sobic002G247800 Sobic006G190600--Sobic002G247800 Sobic003G125332--Sobic002G136600 Sobic003G034600 Sobic003G034600 Sobic003G125332--Sobic003G034600 Sobic003G125332--Sobic010G101100 Sobic003G125332--Sobic002G074200 Sobic001G531300 Sobic001G531300 Sobic003G125332--Sobic001G531300 Sobic003G125332--Sobic003G276500 Sobic003G125332--Sobic006G190600 Sobic003G125332--Sobic001G475500 Sobic003G125332--Sobic005G142500 Sobic003G276500--Sobic003G375100 Sobic003G276500--Sobic002G136600 Sobic003G276500--Sobic010G101100 Sobic003G276500--Sobic003G125332 Sobic003G276500--Sobic002G074200 Sobic009G042500 Sobic009G042500 Sobic003G276500--Sobic009G042500 Sobic001G296000 Sobic001G296000 Sobic003G276500--Sobic001G296000 Sobic009G080300 Sobic009G080300 Sobic003G276500--Sobic009G080300 Sobic010G085000 Sobic010G085000 Sobic003G276500--Sobic010G085000
Octagon: transcription factors


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