Gene annotation
Transcriptome id Sobic.001G363000.1
Synonym Sb01g034660
Functional annotation uncharacterized protein HI0077, putative, expressed
UniProt C5WYR9
Pfam PF04305
Panther DB PTHR21496 PTHR21496:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G04520 : Protein of unknown function DUF455
RAP-DB (Rice) LOC_Os03g24830.1 : uncharacterized protein HI0077, putative, expressed
MaizeGDB (Corn) Zm00025a002579 , Zm00025a002578
Brachypodium KQK21593
Barley HORVU6Hr1G080400.8 , HORVU6Hr1G080400.9 , HORVU6Hr1G080400.2 , HORVU6Hr1G080400.3 , HORVU6Hr1G080400.4 , HORVU6Hr1G080400.5 , HORVU6Hr1G080400.6 , HORVU6Hr1G080400.7 , HORVU6Hr1G080400.12 , HORVU6Hr1G080400.10
Wheat TraesCS6B02G362600 , TraesCS6D02G311100 , TraesCS6A02G331800
Populus -


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cDNA sequences
Sobic.001G363000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G164700 h/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed K11128: GAR1, H/ACA ribonucleoprotein complex subunit 1
2 Sobic.007G143000 ribosomal protein S17, putative, expressed K02961: RP-S17, MRPS17, small subunit ribosomal protein S17
3 Sobic.002G079900 tryptophan/tyrosine permease family protein, putative, expressed -
4 Sobic.003G401400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed -
5 Sobic.001G451901 - -
6 Sobic.007G034400 RNA recognition motif containing protein, putative, expressed -
7 Sobic.003G128000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
8 Sobic.005G132700 acetyltransferase, GNAT family, putative, expressed K00670: NAA30, N-alpha-acetyltransferase 30
9 Sobic.001G214900 expressed protein -
10 Sobic.002G253100 30S ribosomal protein S16, putative, expressed K02959: RP-S16, MRPS16, small subunit ribosomal protein S16
11 Sobic.003G330200 cupin, RmlC-type, putative, expressed -
12 Sobic.001G081400 ankyrin repeat domain containing protein, putative, expressed K18477: type IV protein arginine methyltransferase
13 Sobic.002G402500 ribosomal protein, putative, expressed K02996: RP-S9, MRPS9, small subunit ribosomal protein S9
14 Sobic.009G193850 - -
15 Sobic.004G310900 emp24/gp25L/p24 family protein, putative, expressed -
16 Sobic.007G022500 RNA recognition motif containing protein, putative, expressed K03248: translation initiation factor 3 subunit G
17 Sobic.006G067900 expressed protein -
18 Sobic.007G024500 zinc finger family protein, putative, expressed -
19 Sobic.009G001900 expressed protein -
20 Sobic.004G248900 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17


Gene co-expression network
sample Sobic001G363000 Sobic001G363000 Sobic005G164700 Sobic005G164700 Sobic001G363000--Sobic005G164700 Sobic007G143000 Sobic007G143000 Sobic001G363000--Sobic007G143000 Sobic002G079900 Sobic002G079900 Sobic001G363000--Sobic002G079900 Sobic003G401400 Sobic003G401400 Sobic001G363000--Sobic003G401400 Sobic001G451901 Sobic001G451901 Sobic001G363000--Sobic001G451901 Sobic007G034400 Sobic007G034400 Sobic001G363000--Sobic007G034400 Sobic003G128000 Sobic003G128000 Sobic001G363000--Sobic003G128000 Sobic005G132700 Sobic005G132700 Sobic001G363000--Sobic005G132700 Sobic001G214900 Sobic001G214900 Sobic001G363000--Sobic001G214900 Sobic005G164700--Sobic007G034400 Sobic002G115000 Sobic002G115000 Sobic005G164700--Sobic002G115000 Sobic006G201500 Sobic006G201500 Sobic005G164700--Sobic006G201500 Sobic002G045100 Sobic002G045100 Sobic005G164700--Sobic002G045100 Sobic008G135000 Sobic008G135000 Sobic005G164700--Sobic008G135000 Sobic001G085400 Sobic001G085400 Sobic005G164700--Sobic001G085400 Sobic008G021100 Sobic008G021100 Sobic005G164700--Sobic008G021100 Sobic001G058900 Sobic001G058900 Sobic005G164700--Sobic001G058900 Sobic006G156000 Sobic006G156000 Sobic005G164700--Sobic006G156000 Sobic007G143000--Sobic002G045100 Sobic007G143000--Sobic001G214900 Sobic003G160900 Sobic003G160900 Sobic007G143000--Sobic003G160900 Sobic004G248900 Sobic004G248900 Sobic007G143000--Sobic004G248900 Sobic006G243400 Sobic006G243400 Sobic007G143000--Sobic006G243400 Sobic010G018000 Sobic010G018000 Sobic007G143000--Sobic010G018000 Sobic007G143000--Sobic007G034400 Sobic003G326900 Sobic003G326900 Sobic007G143000--Sobic003G326900 Sobic007G143000--Sobic005G164700 Sobic001G107200 Sobic001G107200 Sobic002G079900--Sobic001G107200 Sobic002G054000 Sobic002G054000 Sobic002G079900--Sobic002G054000 Sobic004G036800 Sobic004G036800 Sobic002G079900--Sobic004G036800 Sobic002G079900--Sobic001G363000 Sobic001G501600 Sobic001G501600 Sobic002G079900--Sobic001G501600 Sobic002G347400 Sobic002G347400 Sobic002G079900--Sobic002G347400 Sobic010G277000 Sobic010G277000 Sobic002G079900--Sobic010G277000 Sobic003G084300 Sobic003G084300 Sobic002G079900--Sobic003G084300 Sobic004G343600 Sobic004G343600 Sobic002G079900--Sobic004G343600 Sobic001G141300 Sobic001G141300 Sobic003G401400--Sobic001G141300 Sobic008G185900 Sobic008G185900 Sobic003G401400--Sobic008G185900 Sobic002G376400 Sobic002G376400 Sobic003G401400--Sobic002G376400 Sobic001G081400 Sobic001G081400 Sobic003G401400--Sobic001G081400 Sobic004G309500 Sobic004G309500 Sobic003G401400--Sobic004G309500 Sobic003G401400--Sobic007G034400 Sobic008G171800 Sobic008G171800 Sobic003G401400--Sobic008G171800 Sobic001G202400 Sobic001G202400 Sobic003G401400--Sobic001G202400 Sobic004G028400 Sobic004G028400 Sobic003G401400--Sobic004G028400 Sobic001G110300 Sobic001G110300 Sobic001G451901--Sobic001G110300 Sobic001G060300 Sobic001G060300 Sobic001G451901--Sobic001G060300 Sobic004G184000 Sobic004G184000 Sobic001G451901--Sobic004G184000 Sobic001G129400 Sobic001G129400 Sobic001G451901--Sobic001G129400 Sobic003G283300 Sobic003G283300 Sobic001G451901--Sobic003G283300 Sobic010G194200 Sobic010G194200 Sobic001G451901--Sobic010G194200 Sobic004G262300 Sobic004G262300 Sobic001G451901--Sobic004G262300 Sobic004G025300 Sobic004G025300 Sobic001G451901--Sobic004G025300 Sobic003G217100 Sobic003G217100 Sobic001G451901--Sobic003G217100 Sobic009G114400 Sobic009G114400 Sobic007G034400--Sobic009G114400 Sobic007G034400--Sobic005G164700 Sobic008G103900 Sobic008G103900 Sobic007G034400--Sobic008G103900 Sobic003G015400 Sobic003G015400 Sobic007G034400--Sobic003G015400 Sobic007G034400--Sobic001G058900 Sobic003G025200 Sobic003G025200 Sobic007G034400--Sobic003G025200 Sobic001G225700 Sobic001G225700 Sobic007G034400--Sobic001G225700 Sobic001G510800 Sobic001G510800 Sobic007G034400--Sobic001G510800 Sobic007G034400--Sobic002G045100 Sobic001G392100 Sobic001G392100 Sobic003G128000--Sobic001G392100 Sobic009G155400 Sobic009G155400 Sobic003G128000--Sobic009G155400 Sobic001G009400 Sobic001G009400 Sobic003G128000--Sobic001G009400 Sobic008G163400 Sobic008G163400 Sobic003G128000--Sobic008G163400 Sobic004G217900 Sobic004G217900 Sobic003G128000--Sobic004G217900 Sobic001G149100 Sobic001G149100 Sobic003G128000--Sobic001G149100 Sobic003G239000 Sobic003G239000 Sobic003G128000--Sobic003G239000 Sobic001G347100 Sobic001G347100 Sobic003G128000--Sobic001G347100 Sobic001G254400 Sobic001G254400 Sobic003G128000--Sobic001G254400 Sobic002G402500 Sobic002G402500 Sobic005G132700--Sobic002G402500 Sobic002G253100 Sobic002G253100 Sobic005G132700--Sobic002G253100 Sobic005G132700--Sobic010G194200 Sobic005G132700--Sobic001G060300 Sobic005G132700--Sobic001G451901 Sobic005G132700--Sobic001G214900 Sobic001G473400 Sobic001G473400 Sobic005G132700--Sobic001G473400 Sobic010G258000 Sobic010G258000 Sobic005G132700--Sobic010G258000 Sobic005G132700--Sobic003G326900 Sobic001G214900--Sobic001G060300 Sobic002G367800 Sobic002G367800 Sobic001G214900--Sobic002G367800 Sobic003G261100 Sobic003G261100 Sobic001G214900--Sobic003G261100 Sobic003G205400 Sobic003G205400 Sobic001G214900--Sobic003G205400 Sobic010G134100 Sobic010G134100 Sobic001G214900--Sobic010G134100 Sobic001G214900--Sobic010G277000 Sobic001G214900--Sobic007G143000 Sobic001G214900--Sobic002G402500 Sobic001G530800 Sobic001G530800 Sobic001G214900--Sobic001G530800
Octagon: transcription factors


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