Gene annotation
| Transcriptome id | Sobic.003G174700.1 |
|---|---|
| Synonym | Sb03g021850 |
| Functional annotation | expressed protein |
| UniProt | C5XM25 |
| Pfam | PF08263 PF13855 PF07714 |
| Panther DB | PTHR27008 PTHR27008:SF11 |
| NCBI CDD | KOG1187; Serine/threonine protein kinase |
| KEGG Orthology | - |
| Gene Ontology | GO:0005515; protein binding GO:0006468protein phosphorylation GO:0004672protein kinase activity |
Orthologs (automatic annotation)
| TAIR | AT2G01210 : Leucine-rich repeat protein kinase family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os01g33090.1 : expressed protein |
| MaizeGDB (Corn) | Zm00025a024792 |
| Brachypodium | KQK04494 |
| Barley | HORVU1Hr1G056920.1 |
| Wheat | TraesCS1B02G252400 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G217450 | - | - |
| 2 | Sobic.003G034600 | CAMK_CAMK_like_Aur_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | K08850: aurora kinase, other |
| 3 | Sobic.006G137800 | expressed protein | - |
| 4 | Sobic.006G260300 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@oryzain beta chain precursor, putative, expressed | - |
| 5 | Sobic.006G191800 | Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed | K11254: histone H4 |
| 6 | Sobic.010G221300 | expressed protein | - |
| 7 | Sobic.003G160700 | RALFL8 - Rapid ALkalinization Factor RALF family protein precursor, expressed | - |
| 8 | Sobic.001G529400 | Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed | K11254: histone H4 |
| 9 | Sobic.001G439100 | thaumatin-like protein 1 precursor, putative, expressed | - |
| 10 | Sobic.008G025600 | cyclin-dependent kinase B1-1, putative, expressed | K07760: cyclin-dependent kinase |
| 11 | Sobic.001G505000 | cyclin-dependent kinases regulatory subunit 1, putative, expressed | K02219: cyclin-dependent kinase regulatory subunit CKS1 |
| 12 | Sobic.004G345500 | oxidoreductase, aldo/keto reductase family protein, putative, expressed | - |
| 13 | Sobic.006G149200 | LSM domain containing protein, expressed | K11096: SNRPD2, small nuclear ribonucleoprotein D2 |
| 14 | Sobic.003G379600 | methyltransferase, putative, expressed | - |
| 15 | Sobic.003G125650 | - | K02183: calmodulin |
| 16 | Sobic.001G502900 | nicotiana lesion-inducing like, putative, expressed | - |
| 17 | Sobic.003G027400 | VQ domain containing protein, putative, expressed | - |
| 18 | Sobic.007G195800 | uncharacterized protein family UPF0016 domain containing protein, expressed | - |
| 19 | Sobic.006G159600 | cytochrome b561, putative, expressed | K08360: cytochrome b-561 |
| 20 | Sobic.001G475500 | ras-related protein, putative, expressed | K07904: Ras-related protein Rab-11A |
Gene co-expression network
Octagon: transcription factors
© 2015- RIKEN, All rights reserved.
