Gene annotation
Transcriptome id Sobic.004G217450.1
Synonym -
Functional annotation -
UniProt A0A1Z5RNM0
Pfam PF17123 PF14624 PF00092
Panther DB PTHR10579 PTHR10579:SF49
NCBI CDD KOG1493; Anaphase-promoting complex (APC), subunit 11
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G60710 : Zinc finger (C3HC4-type RING finger) family protein
RAP-DB (Rice) LOC_Os02g40664.1 : zinc finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a021133 , Zm00025a031997
Brachypodium PNT69082 , PNT69081 , PNT69080
Barley HORVU2Hr1G088110.8 , HORVU2Hr1G088110.9 , HORVU2Hr1G088110.6 , HORVU2Hr1G088110.7 , HORVU2Hr1G088110.2 , HORVU2Hr1G088110.3 , HORVU2Hr1G088110.1 , HORVU2Hr1G088110.10 , HORVU6Hr1G057680.2 , HORVU6Hr1G057680.3 , HORVU6Hr1G057680.6 , HORVU6Hr1G057680.7 , HORVU6Hr1G057680.4 , HORVU6Hr1G057680.5 , HORVU6Hr1G057680.8 , HORVU2Hr1G088110.4 , HORVU2Hr1G088110.5
Wheat TraesCS6A02G227300 , TraesCS6D02G207700 , TraesCS6D02G207700 , TraesCS2B02G382300 , TraesCS6B02G254400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G385400 ORC6 - Putative origin recognition complex subunit 6, expressed K02608: origin recognition complex subunit 6
2 Sobic.003G034600 CAMK_CAMK_like_Aur_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other
3 Sobic.003G279100 mitochondrial ATP synthase g subunit family protein, putative, expressed K02140: ATPeFG, ATP5L, F-type H+-transporting ATPase subunit g
4 Sobic.006G149200 LSM domain containing protein, expressed K11096: SNRPD2, small nuclear ribonucleoprotein D2
5 Sobic.004G274900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
6 Sobic.007G198000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AIR12, putative, expressed -
7 Sobic.003G174700 expressed protein -
8 Sobic.008G025600 cyclin-dependent kinase B1-1, putative, expressed K07760: cyclin-dependent kinase
9 Sobic.006G115000 LSM domain containing protein, expressed K11087: SNRPD1, small nuclear ribonucleoprotein D1
10 Sobic.003G379600 methyltransferase, putative, expressed -
11 Sobic.003G011100 reticulon domain containing protein, putative, expressed -
12 Sobic.006G137800 expressed protein -
13 Sobic.006G159600 cytochrome b561, putative, expressed K08360: cytochrome b-561
14 Sobic.004G285900 HMG1/2, putative, expressed -
15 Sobic.006G260300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@oryzain beta chain precursor, putative, expressed -
16 Sobic.003G027400 VQ domain containing protein, putative, expressed -
17 Sobic.005G080900 expressed protein -
18 Sobic.010G101100 E2F family transcription factor protein, putative, expressed -
19 Sobic.002G286900 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
20 Sobic.002G201600 methyltransferase, putative, expressed -


Gene co-expression network
sample Sobic004G217450 Sobic004G217450 Sobic002G385400 Sobic002G385400 Sobic004G217450--Sobic002G385400 Sobic003G034600 Sobic003G034600 Sobic004G217450--Sobic003G034600 Sobic003G279100 Sobic003G279100 Sobic004G217450--Sobic003G279100 Sobic006G149200 Sobic006G149200 Sobic004G217450--Sobic006G149200 Sobic004G274900 Sobic004G274900 Sobic004G217450--Sobic004G274900 Sobic007G198000 Sobic007G198000 Sobic004G217450--Sobic007G198000 Sobic003G174700 Sobic003G174700 Sobic004G217450--Sobic003G174700 Sobic008G025600 Sobic008G025600 Sobic004G217450--Sobic008G025600 Sobic006G115000 Sobic006G115000 Sobic004G217450--Sobic006G115000 Sobic002G385400--Sobic004G217450 Sobic010G023900 Sobic010G023900 Sobic002G385400--Sobic010G023900 Sobic002G258300 Sobic002G258300 Sobic002G385400--Sobic002G258300 Sobic004G342400 Sobic004G342400 Sobic002G385400--Sobic004G342400 Sobic003G084300 Sobic003G084300 Sobic002G385400--Sobic003G084300 Sobic005G080900 Sobic005G080900 Sobic002G385400--Sobic005G080900 Sobic002G385400--Sobic003G034600 Sobic002G385400--Sobic004G274900 Sobic002G385400--Sobic006G115000 Sobic003G034600--Sobic004G217450 Sobic003G122200 Sobic003G122200 Sobic003G034600--Sobic003G122200 Sobic001G475500 Sobic001G475500 Sobic003G034600--Sobic001G475500 Sobic003G307400 Sobic003G307400 Sobic003G034600--Sobic003G307400 Sobic006G191800 Sobic006G191800 Sobic003G034600--Sobic006G191800 Sobic006G200000 Sobic006G200000 Sobic003G034600--Sobic006G200000 Sobic003G160700 Sobic003G160700 Sobic003G034600--Sobic003G160700 Sobic009G173500 Sobic009G173500 Sobic003G034600--Sobic009G173500 Sobic007G150800 Sobic007G150800 Sobic003G034600--Sobic007G150800 Sobic003G279100--Sobic004G217450 Sobic003G279100--Sobic006G149200 Sobic004G285900 Sobic004G285900 Sobic003G279100--Sobic004G285900 Sobic001G300400 Sobic001G300400 Sobic003G279100--Sobic001G300400 Sobic010G222100 Sobic010G222100 Sobic003G279100--Sobic010G222100 Sobic006G081800 Sobic006G081800 Sobic003G279100--Sobic006G081800 Sobic010G215800 Sobic010G215800 Sobic003G279100--Sobic010G215800 Sobic001G505000 Sobic001G505000 Sobic003G279100--Sobic001G505000 Sobic001G261549 Sobic001G261549 Sobic003G279100--Sobic001G261549 Sobic006G149200--Sobic006G115000 Sobic002G286900 Sobic002G286900 Sobic006G149200--Sobic002G286900 Sobic003G018600 Sobic003G018600 Sobic006G149200--Sobic003G018600 Sobic003G073900 Sobic003G073900 Sobic006G149200--Sobic003G073900 Sobic006G149200--Sobic004G217450 Sobic003G150000 Sobic003G150000 Sobic006G149200--Sobic003G150000 Sobic006G231700 Sobic006G231700 Sobic006G149200--Sobic006G231700 Sobic005G110800 Sobic005G110800 Sobic006G149200--Sobic005G110800 Sobic006G159600 Sobic006G159600 Sobic006G149200--Sobic006G159600 Sobic001G368800 Sobic001G368800 Sobic004G274900--Sobic001G368800 Sobic004G274900--Sobic008G025600 Sobic004G274900--Sobic005G080900 Sobic004G274900--Sobic004G217450 Sobic010G023800 Sobic010G023800 Sobic004G274900--Sobic010G023800 Sobic008G112600 Sobic008G112600 Sobic004G274900--Sobic008G112600 Sobic005G084600 Sobic005G084600 Sobic004G274900--Sobic005G084600 Sobic004G274900--Sobic006G159600 Sobic004G274900--Sobic002G385400 Sobic003G347900 Sobic003G347900 Sobic007G198000--Sobic003G347900 Sobic006G057200 Sobic006G057200 Sobic007G198000--Sobic006G057200 Sobic001G529400 Sobic001G529400 Sobic007G198000--Sobic001G529400 Sobic010G070500 Sobic010G070500 Sobic007G198000--Sobic010G070500 Sobic007G198000--Sobic003G160700 Sobic010G047100 Sobic010G047100 Sobic007G198000--Sobic010G047100 Sobic007G198000--Sobic001G475500 Sobic003G027400 Sobic003G027400 Sobic007G198000--Sobic003G027400 Sobic003G379600 Sobic003G379600 Sobic007G198000--Sobic003G379600 Sobic003G174700--Sobic004G217450 Sobic003G174700--Sobic003G034600 Sobic006G137800 Sobic006G137800 Sobic003G174700--Sobic006G137800 Sobic006G260300 Sobic006G260300 Sobic003G174700--Sobic006G260300 Sobic003G174700--Sobic006G191800 Sobic010G221300 Sobic010G221300 Sobic003G174700--Sobic010G221300 Sobic003G174700--Sobic003G160700 Sobic003G174700--Sobic001G529400 Sobic001G439100 Sobic001G439100 Sobic003G174700--Sobic001G439100 Sobic008G025600--Sobic006G137800 Sobic004G205100 Sobic004G205100 Sobic008G025600--Sobic004G205100 Sobic001G339700 Sobic001G339700 Sobic008G025600--Sobic001G339700 Sobic006G099900 Sobic006G099900 Sobic008G025600--Sobic006G099900 Sobic002G200600 Sobic002G200600 Sobic008G025600--Sobic002G200600 Sobic003G417800 Sobic003G417800 Sobic008G025600--Sobic003G417800 Sobic009G183400 Sobic009G183400 Sobic008G025600--Sobic009G183400 Sobic007G227300 Sobic007G227300 Sobic008G025600--Sobic007G227300 Sobic007G184600 Sobic007G184600 Sobic008G025600--Sobic007G184600 Sobic006G115000--Sobic003G018600 Sobic006G115000--Sobic002G286900 Sobic006G115000--Sobic010G023900 Sobic009G233400 Sobic009G233400 Sobic006G115000--Sobic009G233400 Sobic003G249700 Sobic003G249700 Sobic006G115000--Sobic003G249700 Sobic010G069400 Sobic010G069400 Sobic006G115000--Sobic010G069400 Sobic006G137100 Sobic006G137100 Sobic006G115000--Sobic006G137100 Sobic003G387900 Sobic003G387900 Sobic006G115000--Sobic003G387900 Sobic002G331300 Sobic002G331300 Sobic006G115000--Sobic002G331300
Octagon: transcription factors


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