Gene annotation
Transcriptome id Sobic.004G274900.2,Sobic.004G274900.1,Sobic.004G274900.4,Sobic.004G274900.3
Synonym Sb04g031200, UBP21
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
UniProt A0A1Z5RPE5 , A0A194YS02
Pfam PF13423
Panther DB PTHR24006 PTHR24006:SF468
NCBI CDD KOG1871; Ubiquitin-specific protease
KEGG Orthology K11855; ubiquitin carboxyl-terminal hydrolase 36/42
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G46740 : ubiquitin-specific protease 21
RAP-DB (Rice) LOC_Os02g46650.1 : ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a021610 , Zm00025a032375
Brachypodium KQK00849 , KQK00848 , PNT69261
Barley -
Wheat TraesCS6A02G264800 , TraesCS6B02G291800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G368800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@diphthine synthase, putative, expressed K00586: diphthine methyl ester synthase
2 Sobic.008G025600 cyclin-dependent kinase B1-1, putative, expressed K07760: cyclin-dependent kinase
3 Sobic.005G080900 expressed protein -
4 Sobic.004G217450 - -
5 Sobic.010G023800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed K00800: 3-phosphoshikimate 1-carboxyvinyltransferase
6 Sobic.008G112600 guanylate kinase, putative, expressed K00942: E2.7.4.8, guanylate kinase
7 Sobic.005G084600 ARGOS, putative, expressed -
8 Sobic.006G159600 cytochrome b561, putative, expressed K08360: cytochrome b-561
9 Sobic.002G385400 ORC6 - Putative origin recognition complex subunit 6, expressed K02608: origin recognition complex subunit 6
10 Sobic.010G060500 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
11 Sobic.001G403000 expressed protein -
12 Sobic.003G072300 triosephosphate isomerase(PubMedID : 27016024)@triosephosphate isomerase, cytosolic, putative, expressed K01803: TPI, triosephosphate isomerase (TIM)
13 Sobic.001G016500 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
14 Sobic.010G028200 GDP-mannose 4,6 dehydratase 2, putative, expressed K01711: gmd, GDPmannose 4,6-dehydratase
15 Sobic.006G137100 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
16 Sobic.003G249900 metallo-beta-lactamase family protein, putative, expressed K17725: sulfur dioxygenase
17 Sobic.004G176600 no apical meristem protein, putative, expressed -
18 Sobic.006G115000 LSM domain containing protein, expressed K11087: SNRPD1, small nuclear ribonucleoprotein D1
19 Sobic.003G436700 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e
20 Sobic.006G137800 expressed protein -


Gene co-expression network
sample Sobic004G274900 Sobic004G274900 Sobic001G368800 Sobic001G368800 Sobic004G274900--Sobic001G368800 Sobic008G025600 Sobic008G025600 Sobic004G274900--Sobic008G025600 Sobic005G080900 Sobic005G080900 Sobic004G274900--Sobic005G080900 Sobic004G217450 Sobic004G217450 Sobic004G274900--Sobic004G217450 Sobic010G023800 Sobic010G023800 Sobic004G274900--Sobic010G023800 Sobic008G112600 Sobic008G112600 Sobic004G274900--Sobic008G112600 Sobic005G084600 Sobic005G084600 Sobic004G274900--Sobic005G084600 Sobic006G159600 Sobic006G159600 Sobic004G274900--Sobic006G159600 Sobic002G385400 Sobic002G385400 Sobic004G274900--Sobic002G385400 Sobic001G368800--Sobic004G274900 Sobic004G176600 Sobic004G176600 Sobic001G368800--Sobic004G176600 Sobic001G368800--Sobic005G084600 Sobic001G368800--Sobic005G080900 Sobic006G211200 Sobic006G211200 Sobic001G368800--Sobic006G211200 Sobic010G257100 Sobic010G257100 Sobic001G368800--Sobic010G257100 Sobic001G403000 Sobic001G403000 Sobic001G368800--Sobic001G403000 Sobic001G368800--Sobic010G023800 Sobic010G209900 Sobic010G209900 Sobic001G368800--Sobic010G209900 Sobic006G137800 Sobic006G137800 Sobic008G025600--Sobic006G137800 Sobic004G205100 Sobic004G205100 Sobic008G025600--Sobic004G205100 Sobic001G339700 Sobic001G339700 Sobic008G025600--Sobic001G339700 Sobic006G099900 Sobic006G099900 Sobic008G025600--Sobic006G099900 Sobic002G200600 Sobic002G200600 Sobic008G025600--Sobic002G200600 Sobic003G417800 Sobic003G417800 Sobic008G025600--Sobic003G417800 Sobic009G183400 Sobic009G183400 Sobic008G025600--Sobic009G183400 Sobic007G227300 Sobic007G227300 Sobic008G025600--Sobic007G227300 Sobic007G184600 Sobic007G184600 Sobic008G025600--Sobic007G184600 Sobic003G436700 Sobic003G436700 Sobic005G080900--Sobic003G436700 Sobic003G109600 Sobic003G109600 Sobic005G080900--Sobic003G109600 Sobic004G252100 Sobic004G252100 Sobic005G080900--Sobic004G252100 Sobic002G379500 Sobic002G379500 Sobic005G080900--Sobic002G379500 Sobic006G067800 Sobic006G067800 Sobic005G080900--Sobic006G067800 Sobic009G101700 Sobic009G101700 Sobic005G080900--Sobic009G101700 Sobic006G261900 Sobic006G261900 Sobic005G080900--Sobic006G261900 Sobic001G016500 Sobic001G016500 Sobic005G080900--Sobic001G016500 Sobic002G286900 Sobic002G286900 Sobic005G080900--Sobic002G286900 Sobic004G217450--Sobic002G385400 Sobic003G034600 Sobic003G034600 Sobic004G217450--Sobic003G034600 Sobic003G279100 Sobic003G279100 Sobic004G217450--Sobic003G279100 Sobic006G149200 Sobic006G149200 Sobic004G217450--Sobic006G149200 Sobic004G217450--Sobic004G274900 Sobic007G198000 Sobic007G198000 Sobic004G217450--Sobic007G198000 Sobic003G174700 Sobic003G174700 Sobic004G217450--Sobic003G174700 Sobic004G217450--Sobic008G025600 Sobic006G115000 Sobic006G115000 Sobic004G217450--Sobic006G115000 Sobic007G115100 Sobic007G115100 Sobic010G023800--Sobic007G115100 Sobic010G060500 Sobic010G060500 Sobic010G023800--Sobic010G060500 Sobic004G269700 Sobic004G269700 Sobic010G023800--Sobic004G269700 Sobic001G459900 Sobic001G459900 Sobic010G023800--Sobic001G459900 Sobic003G209000 Sobic003G209000 Sobic010G023800--Sobic003G209000 Sobic009G149400 Sobic009G149400 Sobic010G023800--Sobic009G149400 Sobic008G129400 Sobic008G129400 Sobic010G023800--Sobic008G129400 Sobic002G187500 Sobic002G187500 Sobic010G023800--Sobic002G187500 Sobic001G505500 Sobic001G505500 Sobic010G023800--Sobic001G505500 Sobic003G072300 Sobic003G072300 Sobic008G112600--Sobic003G072300 Sobic009G179900 Sobic009G179900 Sobic008G112600--Sobic009G179900 Sobic004G334400 Sobic004G334400 Sobic008G112600--Sobic004G334400 Sobic008G112600--Sobic005G084600 Sobic008G112600--Sobic007G115100 Sobic001G082600 Sobic001G082600 Sobic008G112600--Sobic001G082600 Sobic008G112600--Sobic004G205100 Sobic008G112600--Sobic004G269700 Sobic008G112600--Sobic002G187500 Sobic005G084600--Sobic004G176600 Sobic005G084600--Sobic001G339700 Sobic009G120000 Sobic009G120000 Sobic005G084600--Sobic009G120000 Sobic008G032100 Sobic008G032100 Sobic005G084600--Sobic008G032100 Sobic005G206601 Sobic005G206601 Sobic005G084600--Sobic005G206601 Sobic002G375400 Sobic002G375400 Sobic005G084600--Sobic002G375400 Sobic010G009300 Sobic010G009300 Sobic005G084600--Sobic010G009300 Sobic010G185000 Sobic010G185000 Sobic005G084600--Sobic010G185000 Sobic005G084600--Sobic003G417800 Sobic006G159600--Sobic006G137800 Sobic002G348100 Sobic002G348100 Sobic006G159600--Sobic002G348100 Sobic003G125650 Sobic003G125650 Sobic006G159600--Sobic003G125650 Sobic006G159600--Sobic006G067800 Sobic004G321300 Sobic004G321300 Sobic006G159600--Sobic004G321300 Sobic006G159600--Sobic008G025600 Sobic007G197800 Sobic007G197800 Sobic006G159600--Sobic007G197800 Sobic009G159400 Sobic009G159400 Sobic006G159600--Sobic009G159400 Sobic001G464900 Sobic001G464900 Sobic006G159600--Sobic001G464900 Sobic002G385400--Sobic004G217450 Sobic010G023900 Sobic010G023900 Sobic002G385400--Sobic010G023900 Sobic002G258300 Sobic002G258300 Sobic002G385400--Sobic002G258300 Sobic004G342400 Sobic004G342400 Sobic002G385400--Sobic004G342400 Sobic003G084300 Sobic003G084300 Sobic002G385400--Sobic003G084300 Sobic002G385400--Sobic005G080900 Sobic002G385400--Sobic003G034600 Sobic002G385400--Sobic004G274900 Sobic002G385400--Sobic006G115000
Octagon: transcription factors


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