Gene annotation
Transcriptome id Sobic.001G368800.1
Synonym Sb01g035110
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
diphthine synthase, putative, expressed
UniProt C5WZQ7
Pfam PF00590
Panther DB PTHR10882 PTHR10882:SF0
NCBI CDD KOG3123; Diphthine synthase
KEGG Orthology K00586; diphthine methyl ester synthase
Gene Ontology GO:0008168; methyltransferase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT4G31790 : Tetrapyrrole (Corrin/Porphyrin) Methylases
RAP-DB (Rice) LOC_Os03g23970.2 : diphthine synthase, putative, expressed
MaizeGDB (Corn) Zm00025a002514
Brachypodium KQK21659 , KQK21658
Barley HORVU5Hr1G050850.5 , HORVU5Hr1G050850.4 , HORVU5Hr1G050850.7 , HORVU5Hr1G050850.6 , HORVU5Hr1G050850.1 , HORVU5Hr1G050850.3 , HORVU5Hr1G050850.2
Wheat TraesCS5B02G160300 , TraesCS5A02G162900 , TraesCS5D02G167900
Populus -


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cDNA sequences
Sobic.001G368800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G274900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
2 Sobic.004G176600 no apical meristem protein, putative, expressed -
3 Sobic.005G084600 ARGOS, putative, expressed -
4 Sobic.005G080900 expressed protein -
5 Sobic.006G211200 expressed protein -
6 Sobic.010G257100 CGMC_MAPKCMGC_2.11 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
7 Sobic.001G403000 expressed protein -
8 Sobic.010G023800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed K00800: 3-phosphoshikimate 1-carboxyvinyltransferase
9 Sobic.010G209900 phospholipase D. Active site motif family protein, expressed K16860: phospholipase D3/4
10 Sobic.002G312900 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
11 Sobic.010G060500 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
12 Sobic.004G252100 ribosomal protein L7Ae, putative, expressed K11129: NHP2, H/ACA ribonucleoprotein complex subunit 2
13 Sobic.009G072900 calmodulin-binding protein, putative, expressed -
14 Sobic.006G147000 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
15 Sobic.003G272500 60S ribosomal protein L28-1, putative, expressed K02903: RP-L28e, large subunit ribosomal protein L28e
16 Sobic.003G366600 anthocyanidin 3-O-glucosyltransferase, putative, expressed -
17 Sobic.002G196100 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
18 Sobic.001G016500 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
19 Sobic.003G437200 sulfotransferase domain containing protein, expressed -
20 Sobic.003G346600 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e


Gene co-expression network
sample Sobic001G368800 Sobic001G368800 Sobic004G274900 Sobic004G274900 Sobic001G368800--Sobic004G274900 Sobic004G176600 Sobic004G176600 Sobic001G368800--Sobic004G176600 Sobic005G084600 Sobic005G084600 Sobic001G368800--Sobic005G084600 Sobic005G080900 Sobic005G080900 Sobic001G368800--Sobic005G080900 Sobic006G211200 Sobic006G211200 Sobic001G368800--Sobic006G211200 Sobic010G257100 Sobic010G257100 Sobic001G368800--Sobic010G257100 Sobic001G403000 Sobic001G403000 Sobic001G368800--Sobic001G403000 Sobic010G023800 Sobic010G023800 Sobic001G368800--Sobic010G023800 Sobic010G209900 Sobic010G209900 Sobic001G368800--Sobic010G209900 Sobic004G274900--Sobic001G368800 Sobic008G025600 Sobic008G025600 Sobic004G274900--Sobic008G025600 Sobic004G274900--Sobic005G080900 Sobic004G217450 Sobic004G217450 Sobic004G274900--Sobic004G217450 Sobic004G274900--Sobic010G023800 Sobic008G112600 Sobic008G112600 Sobic004G274900--Sobic008G112600 Sobic004G274900--Sobic005G084600 Sobic006G159600 Sobic006G159600 Sobic004G274900--Sobic006G159600 Sobic002G385400 Sobic002G385400 Sobic004G274900--Sobic002G385400 Sobic006G044100 Sobic006G044100 Sobic004G176600--Sobic006G044100 Sobic002G375400 Sobic002G375400 Sobic004G176600--Sobic002G375400 Sobic004G107700 Sobic004G107700 Sobic004G176600--Sobic004G107700 Sobic004G176600--Sobic005G084600 Sobic003G255200 Sobic003G255200 Sobic004G176600--Sobic003G255200 Sobic003G437200 Sobic003G437200 Sobic004G176600--Sobic003G437200 Sobic003G417800 Sobic003G417800 Sobic004G176600--Sobic003G417800 Sobic010G185000 Sobic010G185000 Sobic004G176600--Sobic010G185000 Sobic004G348400 Sobic004G348400 Sobic004G176600--Sobic004G348400 Sobic005G084600--Sobic004G176600 Sobic001G339700 Sobic001G339700 Sobic005G084600--Sobic001G339700 Sobic009G120000 Sobic009G120000 Sobic005G084600--Sobic009G120000 Sobic008G032100 Sobic008G032100 Sobic005G084600--Sobic008G032100 Sobic005G206601 Sobic005G206601 Sobic005G084600--Sobic005G206601 Sobic005G084600--Sobic002G375400 Sobic010G009300 Sobic010G009300 Sobic005G084600--Sobic010G009300 Sobic005G084600--Sobic010G185000 Sobic005G084600--Sobic003G417800 Sobic003G436700 Sobic003G436700 Sobic005G080900--Sobic003G436700 Sobic003G109600 Sobic003G109600 Sobic005G080900--Sobic003G109600 Sobic004G252100 Sobic004G252100 Sobic005G080900--Sobic004G252100 Sobic002G379500 Sobic002G379500 Sobic005G080900--Sobic002G379500 Sobic006G067800 Sobic006G067800 Sobic005G080900--Sobic006G067800 Sobic009G101700 Sobic009G101700 Sobic005G080900--Sobic009G101700 Sobic006G261900 Sobic006G261900 Sobic005G080900--Sobic006G261900 Sobic001G016500 Sobic001G016500 Sobic005G080900--Sobic001G016500 Sobic002G286900 Sobic002G286900 Sobic005G080900--Sobic002G286900 Sobic006G147000 Sobic006G147000 Sobic006G211200--Sobic006G147000 Sobic003G321700 Sobic003G321700 Sobic006G211200--Sobic003G321700 Sobic007G190800 Sobic007G190800 Sobic006G211200--Sobic007G190800 Sobic007G019000 Sobic007G019000 Sobic006G211200--Sobic007G019000 Sobic004G322200 Sobic004G322200 Sobic006G211200--Sobic004G322200 Sobic010G259900 Sobic010G259900 Sobic006G211200--Sobic010G259900 Sobic007G212600 Sobic007G212600 Sobic006G211200--Sobic007G212600 Sobic001G016400 Sobic001G016400 Sobic006G211200--Sobic001G016400 Sobic003G322400 Sobic003G322400 Sobic006G211200--Sobic003G322400 Sobic001G019900 Sobic001G019900 Sobic010G257100--Sobic001G019900 Sobic001G084900 Sobic001G084900 Sobic010G257100--Sobic001G084900 Sobic010G257100--Sobic003G321700 Sobic003G249800 Sobic003G249800 Sobic010G257100--Sobic003G249800 Sobic005G092800 Sobic005G092800 Sobic010G257100--Sobic005G092800 Sobic010G243200 Sobic010G243200 Sobic010G257100--Sobic010G243200 Sobic004G026400 Sobic004G026400 Sobic010G257100--Sobic004G026400 Sobic010G153100 Sobic010G153100 Sobic010G257100--Sobic010G153100 Sobic003G072300 Sobic003G072300 Sobic010G257100--Sobic003G072300 Sobic001G487300 Sobic001G487300 Sobic001G403000--Sobic001G487300 Sobic009G072900 Sobic009G072900 Sobic001G403000--Sobic009G072900 Sobic008G063400 Sobic008G063400 Sobic001G403000--Sobic008G063400 Sobic001G403000--Sobic003G437200 Sobic001G403000--Sobic005G206601 Sobic009G240600 Sobic009G240600 Sobic001G403000--Sobic009G240600 Sobic001G403000--Sobic002G375400 Sobic001G403000--Sobic003G417800 Sobic001G403000--Sobic010G185000 Sobic007G115100 Sobic007G115100 Sobic010G023800--Sobic007G115100 Sobic010G060500 Sobic010G060500 Sobic010G023800--Sobic010G060500 Sobic004G269700 Sobic004G269700 Sobic010G023800--Sobic004G269700 Sobic001G459900 Sobic001G459900 Sobic010G023800--Sobic001G459900 Sobic003G209000 Sobic003G209000 Sobic010G023800--Sobic003G209000 Sobic009G149400 Sobic009G149400 Sobic010G023800--Sobic009G149400 Sobic008G129400 Sobic008G129400 Sobic010G023800--Sobic008G129400 Sobic002G187500 Sobic002G187500 Sobic010G023800--Sobic002G187500 Sobic001G505500 Sobic001G505500 Sobic010G023800--Sobic001G505500 Sobic005G058800 Sobic005G058800 Sobic010G209900--Sobic005G058800 Sobic010G209900--Sobic001G339700 Sobic001G025300 Sobic001G025300 Sobic010G209900--Sobic001G025300 Sobic010G209900--Sobic005G084600 Sobic001G100700 Sobic001G100700 Sobic010G209900--Sobic001G100700 Sobic002G312900 Sobic002G312900 Sobic010G209900--Sobic002G312900 Sobic010G209900--Sobic009G120000 Sobic001G533400 Sobic001G533400 Sobic010G209900--Sobic001G533400 Sobic001G444400 Sobic001G444400 Sobic010G209900--Sobic001G444400
Octagon: transcription factors


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