Gene annotation
Transcriptome id Sobic.003G272500.1
Synonym Sb03g032450
Functional annotation 60S ribosomal protein L28-1, putative, expressed
UniProt C5XHM7
Pfam PF01778
Panther DB PTHR10544 PTHR10544:SF1
NCBI CDD KOG3412; 60S ribosomal protein L28
KEGG Orthology K02903; RP-L28e, large subunit ribosomal protein L28e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT2G19730 : Ribosomal L28e protein family
RAP-DB (Rice) LOC_Os01g51020.1 : 60S ribosomal protein L28-1, putative, expressed
MaizeGDB (Corn) Zm00025a044413 , Zm00025a036469
Brachypodium KQK09400 , KQK05123 , KQK09399
Barley HORVU1Hr1G079370.1 , HORVU1Hr1G079370.3 , HORVU3Hr1G066430.1 , HORVU3Hr1G066430.2 , HORVU3Hr1G066430.3
Wheat TraesCS7B02G281500 , TraesCS1B02G380800 , TraesCS7B02G324000 , TraesCS1D02G368700 , TraesCS3B02G505000 , TraesCS3D02G497400 , TraesCS3D02G253300 , TraesCS6D02G263800 , TraesCS5D02G549700 , TraesCS3B02G284300 , TraesCS3A02G252700 , TraesCS1A02G363700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G166100 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
2 Sobic.004G104100 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
3 Sobic.002G255300 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
4 Sobic.010G060500 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
5 Sobic.009G166500 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
6 Sobic.004G103800 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
7 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e
8 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
9 Sobic.003G346600 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
10 Sobic.006G221200 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
11 Sobic.007G019000 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
12 Sobic.004G104300 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
13 Sobic.001G377800 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
14 Sobic.002G286900 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
15 Sobic.006G260400 60S acidic ribosomal protein, putative, expressed K02943: RP-LP2, large subunit ribosomal protein LP2
16 Sobic.006G216600 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
17 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
18 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
19 Sobic.009G163800 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e
20 Sobic.002G049300 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e


Gene co-expression network
sample Sobic003G272500 Sobic003G272500 Sobic010G166100 Sobic010G166100 Sobic003G272500--Sobic010G166100 Sobic004G104100 Sobic004G104100 Sobic003G272500--Sobic004G104100 Sobic002G255300 Sobic002G255300 Sobic003G272500--Sobic002G255300 Sobic010G060500 Sobic010G060500 Sobic003G272500--Sobic010G060500 Sobic009G166500 Sobic009G166500 Sobic003G272500--Sobic009G166500 Sobic004G103800 Sobic004G103800 Sobic003G272500--Sobic004G103800 Sobic007G178600 Sobic007G178600 Sobic003G272500--Sobic007G178600 Sobic001G085400 Sobic001G085400 Sobic003G272500--Sobic001G085400 Sobic003G346600 Sobic003G346600 Sobic003G272500--Sobic003G346600 Sobic010G166100--Sobic004G104100 Sobic006G221200 Sobic006G221200 Sobic010G166100--Sobic006G221200 Sobic010G166100--Sobic004G103800 Sobic010G166100--Sobic007G178600 Sobic007G019000 Sobic007G019000 Sobic010G166100--Sobic007G019000 Sobic004G322200 Sobic004G322200 Sobic010G166100--Sobic004G322200 Sobic006G260400 Sobic006G260400 Sobic010G166100--Sobic006G260400 Sobic010G166100--Sobic001G085400 Sobic002G047600 Sobic002G047600 Sobic010G166100--Sobic002G047600 Sobic001G091801 Sobic001G091801 Sobic004G104100--Sobic001G091801 Sobic004G104100--Sobic006G221200 Sobic004G104100--Sobic004G103800 Sobic010G230700 Sobic010G230700 Sobic004G104100--Sobic010G230700 Sobic004G104100--Sobic010G166100 Sobic004G104300 Sobic004G104300 Sobic004G104100--Sobic004G104300 Sobic005G019700 Sobic005G019700 Sobic004G104100--Sobic005G019700 Sobic004G104100--Sobic009G166500 Sobic009G050300 Sobic009G050300 Sobic004G104100--Sobic009G050300 Sobic004G008400 Sobic004G008400 Sobic002G255300--Sobic004G008400 Sobic009G163800 Sobic009G163800 Sobic002G255300--Sobic009G163800 Sobic002G255300--Sobic003G346600 Sobic009G076400 Sobic009G076400 Sobic002G255300--Sobic009G076400 Sobic002G255300--Sobic007G178600 Sobic004G331400 Sobic004G331400 Sobic002G255300--Sobic004G331400 Sobic002G255300--Sobic010G060500 Sobic007G197800 Sobic007G197800 Sobic002G255300--Sobic007G197800 Sobic002G255300--Sobic009G050300 Sobic010G060500--Sobic003G346600 Sobic006G137100 Sobic006G137100 Sobic010G060500--Sobic006G137100 Sobic010G060500--Sobic004G008400 Sobic010G060500--Sobic009G166500 Sobic010G060500--Sobic009G050300 Sobic010G060500--Sobic007G178600 Sobic010G060500--Sobic002G255300 Sobic006G213000 Sobic006G213000 Sobic010G060500--Sobic006G213000 Sobic010G060500--Sobic009G163800 Sobic006G047400 Sobic006G047400 Sobic009G166500--Sobic006G047400 Sobic009G166500--Sobic009G163800 Sobic009G166500--Sobic003G346600 Sobic009G166500--Sobic009G050300 Sobic009G166500--Sobic001G091801 Sobic002G081600 Sobic002G081600 Sobic009G166500--Sobic002G081600 Sobic001G374700 Sobic001G374700 Sobic009G166500--Sobic001G374700 Sobic001G403500 Sobic001G403500 Sobic009G166500--Sobic001G403500 Sobic009G166500--Sobic010G060500 Sobic004G103800--Sobic004G104100 Sobic004G103800--Sobic004G104300 Sobic004G103800--Sobic007G019000 Sobic004G103800--Sobic010G166100 Sobic004G152700 Sobic004G152700 Sobic004G103800--Sobic004G152700 Sobic004G103800--Sobic001G091801 Sobic004G103800--Sobic010G230700 Sobic004G103800--Sobic004G322200 Sobic007G018300 Sobic007G018300 Sobic004G103800--Sobic007G018300 Sobic007G178600--Sobic004G008400 Sobic007G178600--Sobic007G019000 Sobic007G178600--Sobic003G346600 Sobic007G178600--Sobic009G050300 Sobic008G108601 Sobic008G108601 Sobic007G178600--Sobic008G108601 Sobic007G178600--Sobic006G221200 Sobic007G178600--Sobic009G163800 Sobic003G249700 Sobic003G249700 Sobic007G178600--Sobic003G249700 Sobic007G178600--Sobic002G047600 Sobic002G115000 Sobic002G115000 Sobic001G085400--Sobic002G115000 Sobic002G304900 Sobic002G304900 Sobic001G085400--Sobic002G304900 Sobic002G049300 Sobic002G049300 Sobic001G085400--Sobic002G049300 Sobic001G085400--Sobic002G047600 Sobic006G216600 Sobic006G216600 Sobic001G085400--Sobic006G216600 Sobic001G085400--Sobic003G249700 Sobic003G387900 Sobic003G387900 Sobic001G085400--Sobic003G387900 Sobic001G085400--Sobic007G178600 Sobic002G406500 Sobic002G406500 Sobic001G085400--Sobic002G406500 Sobic003G346600--Sobic010G060500 Sobic003G346600--Sobic009G050300 Sobic003G346600--Sobic002G081600 Sobic003G346600--Sobic009G166500 Sobic003G346600--Sobic004G008400 Sobic003G346600--Sobic009G163800 Sobic003G346600--Sobic007G178600 Sobic006G116700 Sobic006G116700 Sobic003G346600--Sobic006G116700 Sobic003G346600--Sobic006G137100
Octagon: transcription factors


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