Gene annotation
Transcriptome id Sobic.002G385400.1
Synonym Sb02g040150, ATORC6, ORC6
Functional annotation ORC6 - Putative origin recognition complex subunit 6, expressed
UniProt C5X367
Pfam PF05460
Panther DB PTHR13394 PTHR13394:SF0
NCBI CDD KOG4557; Origin recognition complex, subunit 6
KEGG Orthology K02608; origin recognition complex subunit 6
Gene Ontology GO:0006260; DNA replication GO:0005664nuclear origin of replication recognition complex GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G26840 : origin recognition complex protein 6
RAP-DB (Rice) LOC_Os07g43540.1 : ORC6 - Putative origin recognition complex subunit 6, expressed
MaizeGDB (Corn) Zm00025a048845
Brachypodium KQK15089 , KQK15088
Barley HORVU2Hr1G028500.10 , HORVU2Hr1G028500.9 , HORVU2Hr1G028500.3 , HORVU2Hr1G028500.2 , HORVU2Hr1G028500.1 , HORVU2Hr1G028500.7 , HORVU2Hr1G028500.6 , HORVU2Hr1G028500.5 , HORVU2Hr1G028500.4
Wheat TraesCS5B02G221800 , TraesCS5B02G221800 , TraesCS5B02G221800 , TraesCS2A02G157700 , TraesCS5A02G222800 , TraesCS5A02G222800 , TraesCS2B02G183200 , TraesCS2D02G163800 , TraesCS2D02G163800 , TraesCS5D02G230600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G217450 - -
2 Sobic.010G023900 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
3 Sobic.002G258300 peroxidase precursor, putative, expressed K00430: peroxidase
4 Sobic.004G342400 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
5 Sobic.003G084300 mediator of RNA polymerase II transcription subunit 22, putative, expressed K15139: mediator of RNA polymerase II transcription subunit 22
6 Sobic.005G080900 expressed protein -
7 Sobic.003G034600 CAMK_CAMK_like_Aur_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other
8 Sobic.004G274900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
9 Sobic.006G115000 LSM domain containing protein, expressed K11087: SNRPD1, small nuclear ribonucleoprotein D1
10 Sobic.009G173500 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e
11 Sobic.006G083000 CAMK_CAMK_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2
12 Sobic.002G179300 60S ribosomal protein L35a-3, putative, expressed K02917: RP-L35Ae, large subunit ribosomal protein L35Ae
13 Sobic.001G157800 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
14 Sobic.003G011100 reticulon domain containing protein, putative, expressed -
15 Sobic.002G286900 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
16 Sobic.010G069400 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
17 Sobic.006G200000 RNA recognition motif, putative, expressed -
18 Sobic.003G387900 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
19 Sobic.009G179100 ribosomal protein L7Ae, putative, expressed K02908: RP-L30e, large subunit ribosomal protein L30e
20 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e


Gene co-expression network
sample Sobic002G385400 Sobic002G385400 Sobic004G217450 Sobic004G217450 Sobic002G385400--Sobic004G217450 Sobic010G023900 Sobic010G023900 Sobic002G385400--Sobic010G023900 Sobic002G258300 Sobic002G258300 Sobic002G385400--Sobic002G258300 Sobic004G342400 Sobic004G342400 Sobic002G385400--Sobic004G342400 Sobic003G084300 Sobic003G084300 Sobic002G385400--Sobic003G084300 Sobic005G080900 Sobic005G080900 Sobic002G385400--Sobic005G080900 Sobic003G034600 Sobic003G034600 Sobic002G385400--Sobic003G034600 Sobic004G274900 Sobic004G274900 Sobic002G385400--Sobic004G274900 Sobic006G115000 Sobic006G115000 Sobic002G385400--Sobic006G115000 Sobic004G217450--Sobic002G385400 Sobic004G217450--Sobic003G034600 Sobic003G279100 Sobic003G279100 Sobic004G217450--Sobic003G279100 Sobic006G149200 Sobic006G149200 Sobic004G217450--Sobic006G149200 Sobic004G217450--Sobic004G274900 Sobic007G198000 Sobic007G198000 Sobic004G217450--Sobic007G198000 Sobic003G174700 Sobic003G174700 Sobic004G217450--Sobic003G174700 Sobic008G025600 Sobic008G025600 Sobic004G217450--Sobic008G025600 Sobic004G217450--Sobic006G115000 Sobic010G023900--Sobic004G342400 Sobic001G334300 Sobic001G334300 Sobic010G023900--Sobic001G334300 Sobic009G227400 Sobic009G227400 Sobic010G023900--Sobic009G227400 Sobic002G286900 Sobic002G286900 Sobic010G023900--Sobic002G286900 Sobic003G387900 Sobic003G387900 Sobic010G023900--Sobic003G387900 Sobic009G179100 Sobic009G179100 Sobic010G023900--Sobic009G179100 Sobic009G233400 Sobic009G233400 Sobic010G023900--Sobic009G233400 Sobic006G213000 Sobic006G213000 Sobic010G023900--Sobic006G213000 Sobic001G226500 Sobic001G226500 Sobic010G023900--Sobic001G226500 Sobic002G258300--Sobic002G385400 Sobic004G285900 Sobic004G285900 Sobic002G258300--Sobic004G285900 Sobic007G150800 Sobic007G150800 Sobic002G258300--Sobic007G150800 Sobic002G258300--Sobic003G084300 Sobic003G011100 Sobic003G011100 Sobic002G258300--Sobic003G011100 Sobic001G078600 Sobic001G078600 Sobic002G258300--Sobic001G078600 Sobic006G140100 Sobic006G140100 Sobic002G258300--Sobic006G140100 Sobic004G344500 Sobic004G344500 Sobic002G258300--Sobic004G344500 Sobic006G278100 Sobic006G278100 Sobic002G258300--Sobic006G278100 Sobic004G342400--Sobic010G023900 Sobic004G342400--Sobic009G179100 Sobic004G342400--Sobic001G334300 Sobic009G144300 Sobic009G144300 Sobic004G342400--Sobic009G144300 Sobic009G101700 Sobic009G101700 Sobic004G342400--Sobic009G101700 Sobic004G342400--Sobic009G233400 Sobic002G304900 Sobic002G304900 Sobic004G342400--Sobic002G304900 Sobic004G342400--Sobic003G387900 Sobic009G173500 Sobic009G173500 Sobic004G342400--Sobic009G173500 Sobic001G157800 Sobic001G157800 Sobic003G084300--Sobic001G157800 Sobic009G165500 Sobic009G165500 Sobic003G084300--Sobic009G165500 Sobic009G189200 Sobic009G189200 Sobic003G084300--Sobic009G189200 Sobic003G084300--Sobic003G011100 Sobic003G084300--Sobic002G385400 Sobic010G265900 Sobic010G265900 Sobic003G084300--Sobic010G265900 Sobic003G084300--Sobic002G258300 Sobic006G200000 Sobic006G200000 Sobic003G084300--Sobic006G200000 Sobic006G102900 Sobic006G102900 Sobic003G084300--Sobic006G102900 Sobic003G436700 Sobic003G436700 Sobic005G080900--Sobic003G436700 Sobic003G109600 Sobic003G109600 Sobic005G080900--Sobic003G109600 Sobic004G252100 Sobic004G252100 Sobic005G080900--Sobic004G252100 Sobic002G379500 Sobic002G379500 Sobic005G080900--Sobic002G379500 Sobic006G067800 Sobic006G067800 Sobic005G080900--Sobic006G067800 Sobic005G080900--Sobic009G101700 Sobic006G261900 Sobic006G261900 Sobic005G080900--Sobic006G261900 Sobic001G016500 Sobic001G016500 Sobic005G080900--Sobic001G016500 Sobic005G080900--Sobic002G286900 Sobic003G034600--Sobic004G217450 Sobic003G122200 Sobic003G122200 Sobic003G034600--Sobic003G122200 Sobic001G475500 Sobic001G475500 Sobic003G034600--Sobic001G475500 Sobic003G307400 Sobic003G307400 Sobic003G034600--Sobic003G307400 Sobic006G191800 Sobic006G191800 Sobic003G034600--Sobic006G191800 Sobic003G034600--Sobic006G200000 Sobic003G160700 Sobic003G160700 Sobic003G034600--Sobic003G160700 Sobic003G034600--Sobic009G173500 Sobic003G034600--Sobic007G150800 Sobic001G368800 Sobic001G368800 Sobic004G274900--Sobic001G368800 Sobic004G274900--Sobic008G025600 Sobic004G274900--Sobic005G080900 Sobic004G274900--Sobic004G217450 Sobic010G023800 Sobic010G023800 Sobic004G274900--Sobic010G023800 Sobic008G112600 Sobic008G112600 Sobic004G274900--Sobic008G112600 Sobic005G084600 Sobic005G084600 Sobic004G274900--Sobic005G084600 Sobic006G159600 Sobic006G159600 Sobic004G274900--Sobic006G159600 Sobic004G274900--Sobic002G385400 Sobic003G018600 Sobic003G018600 Sobic006G115000--Sobic003G018600 Sobic006G115000--Sobic002G286900 Sobic006G115000--Sobic010G023900 Sobic006G115000--Sobic009G233400 Sobic003G249700 Sobic003G249700 Sobic006G115000--Sobic003G249700 Sobic010G069400 Sobic010G069400 Sobic006G115000--Sobic010G069400 Sobic006G137100 Sobic006G137100 Sobic006G115000--Sobic006G137100 Sobic006G115000--Sobic003G387900 Sobic002G331300 Sobic002G331300 Sobic006G115000--Sobic002G331300
Octagon: transcription factors


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