Gene annotation
Transcriptome id Sobic.003G433600.1
Synonym Sb03g046490
Functional annotation pentatricopeptide, putative, expressed
UniProt C5XIL0
Pfam PF14432 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF570
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G13880 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os01g72930.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a025909
Brachypodium PNT73629 , PNT73630 , KQK11645
Barley HORVU3Hr1G110410.4 , HORVU3Hr1G110410.5 , HORVU3Hr1G110410.6 , HORVU3Hr1G110410.7 , HORVU3Hr1G110410.1 , HORVU3Hr1G110410.2 , HORVU3Hr1G110410.3 , HORVU3Hr1G110410.8 , HORVU3Hr1G110410.16 , HORVU3Hr1G110410.15 , HORVU3Hr1G110410.12 , HORVU3Hr1G110410.13 , HORVU3Hr1G110410.10 , HORVU3Hr1G110410.18 , HORVU3Hr1G110410.19 , HORVU3Hr1G110410.20 , HORVU3Hr1G110410.22 , HORVU3Hr1G110410.21 , HORVU3Hr1G110410.17 , HORVU3Hr1G110410.14 , HORVU3Hr1G110410.11
Wheat TraesCS3B02G564300 , TraesCS3A02G500400 , TraesCS3D02G508000 , TraesCS3D02G508000 , TraesCS3D02G507600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G250100 pentatricopeptide, putative, expressed -
2 Sobic.003G202700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
3 Sobic.001G200600 PPR repeat domain containing protein, putative, expressed -
4 Sobic.007G013200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.001G490700 pentatricopeptide, putative, expressed -
6 Sobic.003G032301 - -
7 Sobic.001G491500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
8 Sobic.008G178300 NBS-LRR disease resistance protein, putative, expressed -
9 Sobic.006G222901 - -
10 Sobic.002G412300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
11 Sobic.009G042500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
12 Sobic.008G178200 NBS-LRR disease resistance protein, putative, expressed -
13 Sobic.010G067000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
14 Sobic.003G125200 - -
15 Sobic.007G179500 - -
16 Sobic.003G276901 - K13210: far upstream element-binding protein
17 Sobic.001G527600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@radical SAM enzyme, putative, expressed K02495: hemN, oxygen-independent coproporphyrinogen III oxidase
18 Sobic.001G226200 expressed protein -
19 Sobic.009G237350 - -
20 Sobic.009G079400 EMB2261, putative, expressed -


Gene co-expression network
sample Sobic003G433600 Sobic003G433600 Sobic004G250100 Sobic004G250100 Sobic003G433600--Sobic004G250100 Sobic003G202700 Sobic003G202700 Sobic003G433600--Sobic003G202700 Sobic001G200600 Sobic001G200600 Sobic003G433600--Sobic001G200600 Sobic007G013200 Sobic007G013200 Sobic003G433600--Sobic007G013200 Sobic001G490700 Sobic001G490700 Sobic003G433600--Sobic001G490700 Sobic003G032301 Sobic003G032301 Sobic003G433600--Sobic003G032301 Sobic001G491500 Sobic001G491500 Sobic003G433600--Sobic001G491500 Sobic008G178300 Sobic008G178300 Sobic003G433600--Sobic008G178300 Sobic006G222901 Sobic006G222901 Sobic003G433600--Sobic006G222901 Sobic007G179500 Sobic007G179500 Sobic004G250100--Sobic007G179500 Sobic004G250100--Sobic003G433600 Sobic004G250100--Sobic001G200600 Sobic003G213800 Sobic003G213800 Sobic004G250100--Sobic003G213800 Sobic010G143400 Sobic010G143400 Sobic004G250100--Sobic010G143400 Sobic004G250100--Sobic001G490700 Sobic004G250100--Sobic008G178300 Sobic002G385200 Sobic002G385200 Sobic004G250100--Sobic002G385200 Sobic001G527600 Sobic001G527600 Sobic004G250100--Sobic001G527600 Sobic003G202700--Sobic001G491500 Sobic007G028766 Sobic007G028766 Sobic003G202700--Sobic007G028766 Sobic008G167900 Sobic008G167900 Sobic003G202700--Sobic008G167900 Sobic001G072100 Sobic001G072100 Sobic003G202700--Sobic001G072100 Sobic003G202700--Sobic003G032301 Sobic005G110350 Sobic005G110350 Sobic003G202700--Sobic005G110350 Sobic008G104350 Sobic008G104350 Sobic003G202700--Sobic008G104350 Sobic003G288700 Sobic003G288700 Sobic003G202700--Sobic003G288700 Sobic006G233900 Sobic006G233900 Sobic003G202700--Sobic006G233900 Sobic001G200600--Sobic004G250100 Sobic009G042500 Sobic009G042500 Sobic001G200600--Sobic009G042500 Sobic001G200600--Sobic003G433600 Sobic001G200600--Sobic007G179500 Sobic010G092801 Sobic010G092801 Sobic001G200600--Sobic010G092801 Sobic003G203100 Sobic003G203100 Sobic001G200600--Sobic003G203100 Sobic001G200600--Sobic001G490700 Sobic010G067000 Sobic010G067000 Sobic001G200600--Sobic010G067000 Sobic008G041000 Sobic008G041000 Sobic001G200600--Sobic008G041000 Sobic003G399900 Sobic003G399900 Sobic007G013200--Sobic003G399900 Sobic007G013200--Sobic003G433600 Sobic010G202900 Sobic010G202900 Sobic007G013200--Sobic010G202900 Sobic005G110550 Sobic005G110550 Sobic007G013200--Sobic005G110550 Sobic002G279200 Sobic002G279200 Sobic007G013200--Sobic002G279200 Sobic009G139200 Sobic009G139200 Sobic007G013200--Sobic009G139200 Sobic005G024600 Sobic005G024600 Sobic007G013200--Sobic005G024600 Sobic007G183500 Sobic007G183500 Sobic007G013200--Sobic007G183500 Sobic007G013200--Sobic003G203100 Sobic008G178200 Sobic008G178200 Sobic001G490700--Sobic008G178200 Sobic001G490700--Sobic008G178300 Sobic001G490700--Sobic004G250100 Sobic001G490700--Sobic007G179500 Sobic001G490700--Sobic003G433600 Sobic001G490700--Sobic003G203100 Sobic006G197500 Sobic006G197500 Sobic001G490700--Sobic006G197500 Sobic005G108300 Sobic005G108300 Sobic001G490700--Sobic005G108300 Sobic004G033300 Sobic004G033300 Sobic001G490700--Sobic004G033300 Sobic003G032301--Sobic001G491500 Sobic002G149500 Sobic002G149500 Sobic003G032301--Sobic002G149500 Sobic002G367000 Sobic002G367000 Sobic003G032301--Sobic002G367000 Sobic003G198850 Sobic003G198850 Sobic003G032301--Sobic003G198850 SobicK004201 SobicK004201 Sobic003G032301--SobicK004201 Sobic008G053800 Sobic008G053800 Sobic003G032301--Sobic008G053800 Sobic006G038050 Sobic006G038050 Sobic003G032301--Sobic006G038050 Sobic010G149000 Sobic010G149000 Sobic003G032301--Sobic010G149000 Sobic002G246100 Sobic002G246100 Sobic003G032301--Sobic002G246100 Sobic004G092950 Sobic004G092950 Sobic001G491500--Sobic004G092950 Sobic008G157400 Sobic008G157400 Sobic001G491500--Sobic008G157400 Sobic008G133750 Sobic008G133750 Sobic001G491500--Sobic008G133750 Sobic001G491500--Sobic006G038050 Sobic001G491500--Sobic002G149500 Sobic001G491500--Sobic003G198850 Sobic009G190100 Sobic009G190100 Sobic001G491500--Sobic009G190100 Sobic002G117800 Sobic002G117800 Sobic001G491500--Sobic002G117800 Sobic003G024450 Sobic003G024450 Sobic001G491500--Sobic003G024450 Sobic008G178300--Sobic008G178200 Sobic009G237350 Sobic009G237350 Sobic008G178300--Sobic009G237350 Sobic002G284600 Sobic002G284600 Sobic008G178300--Sobic002G284600 Sobic008G178300--Sobic001G490700 Sobic008G178300--Sobic004G250100 Sobic005G094001 Sobic005G094001 Sobic008G178300--Sobic005G094001 Sobic008G178300--Sobic003G433600 Sobic008G178300--Sobic003G202700 Sobic008G178300--Sobic007G179500 Sobic002G163950 Sobic002G163950 Sobic006G222901--Sobic002G163950 Sobic006G222901--Sobic007G183500 Sobic002G325000 Sobic002G325000 Sobic006G222901--Sobic002G325000 Sobic004G039000 Sobic004G039000 Sobic006G222901--Sobic004G039000 Sobic002G316400 Sobic002G316400 Sobic006G222901--Sobic002G316400 Sobic002G142400 Sobic002G142400 Sobic006G222901--Sobic002G142400 Sobic001G202800 Sobic001G202800 Sobic006G222901--Sobic001G202800 Sobic003G105200 Sobic003G105200 Sobic006G222901--Sobic003G105200 Sobic005G148300 Sobic005G148300 Sobic006G222901--Sobic005G148300
Octagon: transcription factors


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