Gene annotation
Transcriptome id Sobic.002G412300.2
Synonym Sb02g042500
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt C5X4W4
Pfam PF13041
Panther DB PTHR24015 PTHR24015:SF418
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G32630 : Pentatricopeptide repeat (PPR-like) superfamily protein
RAP-DB (Rice) LOC_Os07g47470.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a015403 , Zm00025a015404
Brachypodium KQK14712
Barley HORVU2Hr1G019920.10 , HORVU2Hr1G019880.2 , HORVU2Hr1G019880.1 , HORVU2Hr1G019920.3 , HORVU2Hr1G019920.9 , HORVU2Hr1G019920.8 , HORVU2Hr1G019920.1 , HORVU2Hr1G019920.2 , HORVU2Hr1G019920.5 , HORVU2Hr1G019920.4 , HORVU2Hr1G019920.7 , HORVU2Hr1G019920.6
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G198900 PPR repeat domain containing protein, putative, expressed -
2 Sobic.004G061100 - -
3 Sobic.001G175200 expressed protein -
4 Sobic.001G509901 - -
5 Sobic.003G143600 pectinesterase, putative, expressed -
6 Sobic.003G030100 pentatricopeptide, putative, expressed -
7 Sobic.005G166200 MTN26L5 - MtN26 family protein precursor, expressed -
8 Sobic.008G123700 expressed protein -
9 Sobic.004G079400 FAR1 family protein, expressed -
10 Sobic.001G021601 - -
11 Sobic.004G199100 - -
12 Sobic.002G025200 - -
13 Sobic.002G314100 dimethyladenosine transferase, putative, expressed K14191: 18S rRNA (adenine1779-N6/adenine1780-N6)-dimethyltransferase
14 Sobic.006G224600 harpin-induced protein 1 domain containing protein, expressed -
15 Sobic.009G218700 pentatricopeptide, putative, expressed -
16 Sobic.001G397550 - -
17 Sobic.002G088300 expressed protein -
18 Sobic.004G233100 - -
19 Sobic.006G261650 - -
20 Sobic.007G136500 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant


Gene co-expression network
sample Sobic002G412300 Sobic002G412300 Sobic002G198900 Sobic002G198900 Sobic002G412300--Sobic002G198900 Sobic004G061100 Sobic004G061100 Sobic002G412300--Sobic004G061100 Sobic001G175200 Sobic001G175200 Sobic002G412300--Sobic001G175200 Sobic001G509901 Sobic001G509901 Sobic002G412300--Sobic001G509901 Sobic003G143600 Sobic003G143600 Sobic002G412300--Sobic003G143600 Sobic003G030100 Sobic003G030100 Sobic002G412300--Sobic003G030100 Sobic005G166200 Sobic005G166200 Sobic002G412300--Sobic005G166200 Sobic008G123700 Sobic008G123700 Sobic002G412300--Sobic008G123700 Sobic004G079400 Sobic004G079400 Sobic002G412300--Sobic004G079400 Sobic009G218700 Sobic009G218700 Sobic002G198900--Sobic009G218700 Sobic002G198900--Sobic003G143600 Sobic002G198900--Sobic002G412300 Sobic004G199100 Sobic004G199100 Sobic002G198900--Sobic004G199100 Sobic007G028300 Sobic007G028300 Sobic002G198900--Sobic007G028300 Sobic006G206600 Sobic006G206600 Sobic002G198900--Sobic006G206600 Sobic002G198900--Sobic005G166200 Sobic002G088300 Sobic002G088300 Sobic002G198900--Sobic002G088300 Sobic001G397550 Sobic001G397550 Sobic002G198900--Sobic001G397550 Sobic004G061100--Sobic001G175200 Sobic004G061100--Sobic004G079400 Sobic004G061100--Sobic001G509901 Sobic003G311300 Sobic003G311300 Sobic004G061100--Sobic003G311300 Sobic004G233100 Sobic004G233100 Sobic004G061100--Sobic004G233100 Sobic006G224600 Sobic006G224600 Sobic004G061100--Sobic006G224600 Sobic006G038050 Sobic006G038050 Sobic004G061100--Sobic006G038050 Sobic006G239200 Sobic006G239200 Sobic004G061100--Sobic006G239200 Sobic003G340200 Sobic003G340200 Sobic004G061100--Sobic003G340200 Sobic001G175200--Sobic004G061100 Sobic001G175200--Sobic004G079400 Sobic001G175200--Sobic006G038050 Sobic006G261650 Sobic006G261650 Sobic001G175200--Sobic006G261650 Sobic010G228800 Sobic010G228800 Sobic001G175200--Sobic010G228800 Sobic001G175200--Sobic001G509901 Sobic001G175200--Sobic003G311300 Sobic007G190600 Sobic007G190600 Sobic001G175200--Sobic007G190600 Sobic003G257650 Sobic003G257650 Sobic001G175200--Sobic003G257650 Sobic001G509901--Sobic005G166200 Sobic001G509901--Sobic004G061100 Sobic001G509901--Sobic004G233100 Sobic001G509901--Sobic006G224600 Sobic009G248200 Sobic009G248200 Sobic001G509901--Sobic009G248200 Sobic001G509901--Sobic003G340200 Sobic002G025200 Sobic002G025200 Sobic001G509901--Sobic002G025200 Sobic009G206900 Sobic009G206900 Sobic001G509901--Sobic009G206900 Sobic001G509901--Sobic001G175200 Sobic003G143600--Sobic004G199100 Sobic003G143600--Sobic005G166200 Sobic003G143600--Sobic008G123700 Sobic003G143600--Sobic004G061100 Sobic003G143600--Sobic002G198900 Sobic001G094100 Sobic001G094100 Sobic003G143600--Sobic001G094100 Sobic003G143600--Sobic001G509901 Sobic001G137900 Sobic001G137900 Sobic003G143600--Sobic001G137900 Sobic002G033550 Sobic002G033550 Sobic003G143600--Sobic002G033550 Sobic010G227600 Sobic010G227600 Sobic003G030100--Sobic010G227600 Sobic003G030100--Sobic004G079400 Sobic003G030100--Sobic003G311300 Sobic003G030100--Sobic004G233100 Sobic001G208133 Sobic001G208133 Sobic003G030100--Sobic001G208133 Sobic003G030100--Sobic006G038050 Sobic004G352750 Sobic004G352750 Sobic003G030100--Sobic004G352750 Sobic001G519500 Sobic001G519500 Sobic003G030100--Sobic001G519500 Sobic007G043050 Sobic007G043050 Sobic003G030100--Sobic007G043050 Sobic005G166200--Sobic001G509901 Sobic005G166200--Sobic002G025200 Sobic005G166200--Sobic004G199100 Sobic005G166200--Sobic002G088300 Sobic009G131032 Sobic009G131032 Sobic005G166200--Sobic009G131032 Sobic005G166200--Sobic003G340200 Sobic005G166200--Sobic003G143600 Sobic005G166200--Sobic008G123700 Sobic005G166200--Sobic004G061100 Sobic008G142450 Sobic008G142450 Sobic008G123700--Sobic008G142450 Sobic008G123700--Sobic004G199100 Sobic008G123700--Sobic009G206900 Sobic008G123700--Sobic005G166200 Sobic008G123700--Sobic001G509901 Sobic004G252250 Sobic004G252250 Sobic008G123700--Sobic004G252250 Sobic008G123700--Sobic004G061100 Sobic002G109700 Sobic002G109700 Sobic008G123700--Sobic002G109700 Sobic008G123700--Sobic001G137900 Sobic004G079400--Sobic003G311300 Sobic004G079400--Sobic004G061100 Sobic003G031300 Sobic003G031300 Sobic004G079400--Sobic003G031300 Sobic004G079400--Sobic003G030100 Sobic004G079400--Sobic001G208133 Sobic004G079400--Sobic006G239200 Sobic004G079400--Sobic010G227600 Sobic004G079400--Sobic001G175200 Sobic004G079400--Sobic004G233100
Octagon: transcription factors


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