Gene annotation
Transcriptome id Sobic.009G237350.1
Synonym -
Functional annotation -
UniProt A0A1Z5R3Y9
Pfam PF08268 PF00646
Panther DB PTHR32133 PTHR32133:SF157
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G17480 : F-box and associated interaction domains-containing protein
RAP-DB (Rice) LOC_Os04g11890.1 : OsFBX121 - F-box domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G178200 NBS-LRR disease resistance protein, putative, expressed -
2 Sobic.008G178300 NBS-LRR disease resistance protein, putative, expressed -
3 Sobic.002G284600 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsSAUR39 - Auxin-responsive SAUR gene family member, expressed -
4 Sobic.008G100950 - -
5 Sobic.010G091366 - -
6 Sobic.008G153900 helix-loop-helix DNA-binding domain containing protein, expressed -
7 Sobic.004G338400 "TH1(Ortholog in rice:Li et al., 2012)"(PubMedID : 31659894)@DUF640 domain containing protein, putative, expressed -
8 Sobic.002G054901 - -
9 Sobic.003G316400 expressed protein -
10 Sobic.004G131350 - -
11 Sobic.003G399900 pentatricopeptide repeat protein PPR1106-17, putative, expressed -
12 Sobic.006G197500 helix-loop-helix DNA-binding protein, putative, expressed -
13 Sobic.010G222600 MBTB11 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
14 Sobic.008G182500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@thaumatin, putative, expressed -
15 Sobic.004G087200 flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed -
16 Sobic.002G264100 transcription factor RF2a, putative, expressed -
17 Sobic.003G125200 - -
18 Sobic.001G490700 pentatricopeptide, putative, expressed -
19 Sobic.007G141001 - -
20 Sobic.004G281750 - -


Gene co-expression network
sample Sobic009G237350 Sobic009G237350 Sobic008G178200 Sobic008G178200 Sobic009G237350--Sobic008G178200 Sobic008G178300 Sobic008G178300 Sobic009G237350--Sobic008G178300 Sobic002G284600 Sobic002G284600 Sobic009G237350--Sobic002G284600 Sobic008G100950 Sobic008G100950 Sobic009G237350--Sobic008G100950 Sobic010G091366 Sobic010G091366 Sobic009G237350--Sobic010G091366 Sobic008G153900 Sobic008G153900 Sobic009G237350--Sobic008G153900 Sobic004G338400 Sobic004G338400 Sobic009G237350--Sobic004G338400 Sobic002G054901 Sobic002G054901 Sobic009G237350--Sobic002G054901 Sobic003G316400 Sobic003G316400 Sobic009G237350--Sobic003G316400 Sobic008G178200--Sobic008G178300 Sobic008G178200--Sobic009G237350 Sobic008G178200--Sobic002G284600 Sobic001G490700 Sobic001G490700 Sobic008G178200--Sobic001G490700 Sobic008G178200--Sobic010G091366 Sobic003G202700 Sobic003G202700 Sobic008G178200--Sobic003G202700 Sobic003G433600 Sobic003G433600 Sobic008G178200--Sobic003G433600 Sobic008G178200--Sobic008G153900 Sobic004G250100 Sobic004G250100 Sobic008G178200--Sobic004G250100 Sobic008G178300--Sobic008G178200 Sobic008G178300--Sobic009G237350 Sobic008G178300--Sobic002G284600 Sobic008G178300--Sobic001G490700 Sobic008G178300--Sobic004G250100 Sobic005G094001 Sobic005G094001 Sobic008G178300--Sobic005G094001 Sobic008G178300--Sobic003G433600 Sobic008G178300--Sobic003G202700 Sobic007G179500 Sobic007G179500 Sobic008G178300--Sobic007G179500 Sobic002G284600--Sobic009G237350 Sobic002G284600--Sobic008G178300 Sobic002G284600--Sobic008G178200 Sobic003G395600 Sobic003G395600 Sobic002G284600--Sobic003G395600 Sobic002G284600--Sobic002G054901 Sobic003G009501 Sobic003G009501 Sobic002G284600--Sobic003G009501 Sobic004G087200 Sobic004G087200 Sobic002G284600--Sobic004G087200 Sobic003G311250 Sobic003G311250 Sobic002G284600--Sobic003G311250 Sobic010G222600 Sobic010G222600 Sobic002G284600--Sobic010G222600 Sobic008G100950--Sobic009G237350 Sobic008G100950--Sobic004G338400 Sobic006G197500 Sobic006G197500 Sobic008G100950--Sobic006G197500 Sobic008G100950--Sobic002G054901 Sobic008G100950--Sobic010G091366 Sobic006G053500 Sobic006G053500 Sobic008G100950--Sobic006G053500 Sobic003G399900 Sobic003G399900 Sobic008G100950--Sobic003G399900 Sobic008G100950--Sobic008G153900 Sobic004G131350 Sobic004G131350 Sobic008G100950--Sobic004G131350 Sobic005G181700 Sobic005G181700 Sobic010G091366--Sobic005G181700 Sobic002G069601 Sobic002G069601 Sobic010G091366--Sobic002G069601 Sobic003G318400 Sobic003G318400 Sobic010G091366--Sobic003G318400 Sobic007G059800 Sobic007G059800 Sobic010G091366--Sobic007G059800 Sobic003G034250 Sobic003G034250 Sobic010G091366--Sobic003G034250 Sobic010G091366--Sobic006G053500 Sobic004G082200 Sobic004G082200 Sobic010G091366--Sobic004G082200 Sobic009G150100 Sobic009G150100 Sobic010G091366--Sobic009G150100 Sobic004G201200 Sobic004G201200 Sobic010G091366--Sobic004G201200 Sobic007G141001 Sobic007G141001 Sobic008G153900--Sobic007G141001 Sobic008G153900--Sobic004G082200 Sobic008G153900--Sobic006G053500 Sobic004G019900 Sobic004G019900 Sobic008G153900--Sobic004G019900 Sobic003G091100 Sobic003G091100 Sobic008G153900--Sobic003G091100 Sobic008G153900--Sobic004G131350 Sobic008G153900--Sobic010G091366 Sobic001G218701 Sobic001G218701 Sobic008G153900--Sobic001G218701 Sobic001G272300 Sobic001G272300 Sobic008G153900--Sobic001G272300 Sobic004G338400--Sobic010G091366 Sobic005G156800 Sobic005G156800 Sobic004G338400--Sobic005G156800 Sobic004G338400--Sobic004G082200 Sobic002G380750 Sobic002G380750 Sobic004G338400--Sobic002G380750 Sobic004G338400--Sobic006G053500 Sobic004G338400--Sobic005G181700 Sobic001G307450 Sobic001G307450 Sobic004G338400--Sobic001G307450 Sobic004G338400--Sobic007G141001 Sobic004G338400--Sobic003G034250 Sobic004G281750 Sobic004G281750 Sobic002G054901--Sobic004G281750 Sobic002G054901--Sobic008G153900 Sobic003G188900 Sobic003G188900 Sobic002G054901--Sobic003G188900 Sobic002G054901--Sobic002G284600 Sobic002G054901--Sobic009G237350 Sobic002G054901--Sobic008G100950 Sobic002G054901--Sobic007G141001 Sobic010G103000 Sobic010G103000 Sobic002G054901--Sobic010G103000 Sobic002G054901--Sobic004G131350 Sobic003G316400--Sobic003G399900 Sobic003G316400--Sobic008G153900 Sobic003G316400--Sobic004G131350 Sobic003G316400--Sobic009G237350 Sobic003G316400--Sobic006G053500 Sobic002G264100 Sobic002G264100 Sobic003G316400--Sobic002G264100 Sobic003G316400--Sobic004G087200 Sobic003G316400--Sobic010G091366 Sobic003G316400--Sobic002G054901
Octagon: transcription factors


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