Gene annotation
Transcriptome id Sobic.004G338400.1
Synonym Sb04g036620, LSH4
Functional annotation "TH1(Ortholog in rice:Li et al., 2012)" (PubMedID : 31659894)
DUF640 domain containing protein, putative, expressed
UniProt C5XV71
Pfam PF04852
Panther DB PTHR31165 PTHR31165:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G07090 : Protein of unknown function (DUF640)
RAP-DB (Rice) LOC_Os02g56610.1 : DUF640 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a021109 , Zm00025a041930 , Zm00025a006596 , Zm00025a022541 , Zm00025a017626 , Zm00025a037663 , Zm00025a032852 , Zm00025a056514 , Zm00025a043474 , Zm00025a019050 , Zm00025a037773 , Zm00025a010702 , Zm00025a051795
Brachypodium PNT71068 , KQK10399 , KQK05799 , KQK00399 , KQK17088 , PNT71069 , KQK17087 , KQK10400 , KQJ83599 , KQK01266 , KQJ97098 , KQK00400
Barley HORVU1Hr1G070480.1 , HORVU1Hr1G070480.2 , HORVU1Hr1G041240.2 , HORVU1Hr1G041240.1 , HORVU1Hr1G041240.6 , HORVU1Hr1G041240.7 , HORVU1Hr1G041240.4 , HORVU1Hr1G041240.5 , HORVU7Hr1G106960.7 , HORVU7Hr1G106960.6 , HORVU7Hr1G106960.5 , HORVU7Hr1G106960.4 , HORVU7Hr1G106960.3 , HORVU7Hr1G106960.2 , HORVU2Hr1G089190.1 , HORVU2Hr1G089190.3 , HORVU2Hr1G089190.2 , HORVU2Hr1G089190.5 , HORVU2Hr1G089190.4 , HORVU2Hr1G089190.7 , HORVU2Hr1G089190.6 , HORVU2Hr1G089190.9 , HORVU2Hr1G089190.8 , HORVU6Hr1G058340.2 , HORVU6Hr1G058340.3 , HORVU6Hr1G088790.1 , HORVU6Hr1G088790.2 , HORVU6Hr1G088790.3 , HORVU6Hr1G088790.4 , HORVU6Hr1G088790.5 , HORVU6Hr1G088790.6
Wheat TraesCS1A02G154900 , TraesCS1D02G294600
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G091366 - -
2 Sobic.005G156800 UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
3 Sobic.004G082200 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
4 Sobic.002G380750 - -
5 Sobic.006G053500 expressed protein K10990: RMI1, RecQ-mediated genome instability protein 1
6 Sobic.005G181700 NB-ARC domain containing protein, putative, expressed -
7 Sobic.001G307450 - -
8 Sobic.007G141001 - -
9 Sobic.003G034250 - -
10 Sobic.004G061300 expressed protein -
11 Sobic.001G452400 OsFBX81 - F-box domain containing protein, expressed -
12 Sobic.002G069601 - -
13 Sobic.010G021600 - -
14 Sobic.003G046900 expressed protein -
15 Sobic.008G154000 helix-loop-helix DNA-binding domain containing protein, expressed -
16 Sobic.003G318400 - -
17 Sobic.004G026900 ubiquitin conjugating enzyme protein, putative, expressed -
18 Sobic.001G041450 - -
19 Sobic.007G075200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@bifunctional purine biosynthesis protein purH, putative, expressed K00602: phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase
20 Sobic.007G059800 expressed protein -


Gene co-expression network
sample Sobic004G338400 Sobic004G338400 Sobic010G091366 Sobic010G091366 Sobic004G338400--Sobic010G091366 Sobic005G156800 Sobic005G156800 Sobic004G338400--Sobic005G156800 Sobic004G082200 Sobic004G082200 Sobic004G338400--Sobic004G082200 Sobic002G380750 Sobic002G380750 Sobic004G338400--Sobic002G380750 Sobic006G053500 Sobic006G053500 Sobic004G338400--Sobic006G053500 Sobic005G181700 Sobic005G181700 Sobic004G338400--Sobic005G181700 Sobic001G307450 Sobic001G307450 Sobic004G338400--Sobic001G307450 Sobic007G141001 Sobic007G141001 Sobic004G338400--Sobic007G141001 Sobic003G034250 Sobic003G034250 Sobic004G338400--Sobic003G034250 Sobic010G091366--Sobic005G181700 Sobic002G069601 Sobic002G069601 Sobic010G091366--Sobic002G069601 Sobic003G318400 Sobic003G318400 Sobic010G091366--Sobic003G318400 Sobic007G059800 Sobic007G059800 Sobic010G091366--Sobic007G059800 Sobic010G091366--Sobic003G034250 Sobic010G091366--Sobic006G053500 Sobic010G091366--Sobic004G082200 Sobic009G150100 Sobic009G150100 Sobic010G091366--Sobic009G150100 Sobic004G201200 Sobic004G201200 Sobic010G091366--Sobic004G201200 Sobic005G156800--Sobic002G380750 Sobic001G452400 Sobic001G452400 Sobic005G156800--Sobic001G452400 Sobic010G021600 Sobic010G021600 Sobic005G156800--Sobic010G021600 Sobic001G493300 Sobic001G493300 Sobic005G156800--Sobic001G493300 Sobic001G272300 Sobic001G272300 Sobic005G156800--Sobic001G272300 Sobic007G005800 Sobic007G005800 Sobic004G082200--Sobic007G005800 Sobic001G497750 Sobic001G497750 Sobic004G082200--Sobic001G497750 Sobic007G154901 Sobic007G154901 Sobic004G082200--Sobic007G154901 Sobic008G154000 Sobic008G154000 Sobic004G082200--Sobic008G154000 Sobic003G091100 Sobic003G091100 Sobic004G082200--Sobic003G091100 Sobic001G530650 Sobic001G530650 Sobic004G082200--Sobic001G530650 Sobic004G082200--Sobic001G272300 Sobic002G380750--Sobic005G156800 Sobic002G380750--Sobic001G452400 Sobic002G380750--Sobic010G021600 Sobic002G380750--Sobic001G493300 Sobic002G380750--Sobic001G272300 Sobic006G053500--Sobic003G034250 Sobic006G053500--Sobic008G154000 Sobic006G053500--Sobic003G091100 Sobic010G229200 Sobic010G229200 Sobic006G053500--Sobic010G229200 Sobic001G218701 Sobic001G218701 Sobic006G053500--Sobic001G218701 Sobic007G024900 Sobic007G024900 Sobic006G053500--Sobic007G024900 Sobic007G100275 Sobic007G100275 Sobic006G053500--Sobic007G100275 Sobic003G058400 Sobic003G058400 Sobic006G053500--Sobic003G058400 SobicK042700 SobicK042700 Sobic006G053500--SobicK042700 Sobic005G181700--Sobic007G059800 Sobic005G181700--Sobic003G318400 Sobic005G181700--Sobic004G201200 Sobic005G181700--Sobic002G069601 Sobic005G057600 Sobic005G057600 Sobic005G181700--Sobic005G057600 Sobic001G062200 Sobic001G062200 Sobic005G181700--Sobic001G062200 Sobic001G025201 Sobic001G025201 Sobic005G181700--Sobic001G025201 Sobic003G372950 Sobic003G372950 Sobic005G181700--Sobic003G372950 Sobic004G286450 Sobic004G286450 Sobic005G181700--Sobic004G286450 Sobic005G163450 Sobic005G163450 Sobic001G307450--Sobic005G163450 Sobic003G399166 Sobic003G399166 Sobic001G307450--Sobic003G399166 Sobic001G307450--Sobic005G156800 Sobic001G307450--Sobic002G380750 Sobic003G291050 Sobic003G291050 Sobic001G307450--Sobic003G291050 Sobic001G307450--Sobic004G338400 Sobic001G307450--Sobic001G452400 Sobic007G120100 Sobic007G120100 Sobic001G307450--Sobic007G120100 Sobic001G307450--Sobic010G021600 Sobic007G141001--Sobic001G218701 Sobic007G141001--Sobic008G154000 Sobic007G141001--Sobic003G091100 Sobic007G141001--Sobic001G272300 Sobic003G034250--Sobic008G154000 Sobic003G034250--Sobic001G272300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.