Gene annotation
Transcriptome id Sobic.002G111700.4,Sobic.002G111700.6,Sobic.002G111700.2
Synonym
Functional annotation tetratricopeptide-like helical, putative, expressed
UniProt A0A1B6QAK6
Pfam PF13812 PF13041 PF01535 PF14432
Panther DB PTHR24015 PTHR24015:SF478
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G26782 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os07g20420.1 : tetratricopeptide-like helical, putative, expressed
MaizeGDB (Corn) Zm00025a013304
Brachypodium KQK00426 , KQK00425
Barley HORVU0Hr1G007880.1 , HORVU4Hr1G021240.1
Wheat -
Populus PNS99336 , PNT06678 , PNS99337


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
2 Sobic.004G255300 pentatricopeptide, putative, expressed -
3 Sobic.010G232700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
4 Sobic.003G203100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
5 Sobic.010G067000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
6 Sobic.001G040600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA topoisomerase 2, putative, expressed K02469: DNA gyrase subunit A
7 Sobic.009G238700 EMB2744, putative, expressed -
8 Sobic.008G041000 expressed protein -
9 Sobic.007G060600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
10 Sobic.001G412200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
11 Sobic.008G171500 PPR repeat containing protein, expressed -
12 Sobic.003G336500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KH domain containing protein, putative, expressed K14945: protein quaking
13 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
14 Sobic.008G009300 pentatricopeptide, putative, expressed -
15 Sobic.004G250100 pentatricopeptide, putative, expressed -
16 Sobic.007G013200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.003G412000 tRNA methyltransferase, putative, expressed K03256: TRM6, tRNA (adenine58-N1)-methyltransferase non-catalytic subunit
18 Sobic.006G073600 pentatricopeptide, putative, expressed -
19 Sobic.001G081300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
20 Sobic.002G251800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -


Gene co-expression network
sample Sobic002G111700 Sobic002G111700 Sobic002G084400 Sobic002G084400 Sobic002G111700--Sobic002G084400 Sobic004G255300 Sobic004G255300 Sobic002G111700--Sobic004G255300 Sobic010G232700 Sobic010G232700 Sobic002G111700--Sobic010G232700 Sobic003G203100 Sobic003G203100 Sobic002G111700--Sobic003G203100 Sobic010G067000 Sobic010G067000 Sobic002G111700--Sobic010G067000 Sobic001G040600 Sobic001G040600 Sobic002G111700--Sobic001G040600 Sobic009G238700 Sobic009G238700 Sobic002G111700--Sobic009G238700 Sobic008G041000 Sobic008G041000 Sobic002G111700--Sobic008G041000 Sobic007G060600 Sobic007G060600 Sobic002G111700--Sobic007G060600 Sobic002G084400--Sobic010G232700 Sobic002G084400--Sobic008G041000 Sobic006G085900 Sobic006G085900 Sobic002G084400--Sobic006G085900 Sobic002G251800 Sobic002G251800 Sobic002G084400--Sobic002G251800 Sobic005G028300 Sobic005G028300 Sobic002G084400--Sobic005G028300 Sobic006G069100 Sobic006G069100 Sobic002G084400--Sobic006G069100 Sobic008G031200 Sobic008G031200 Sobic002G084400--Sobic008G031200 Sobic008G171500 Sobic008G171500 Sobic002G084400--Sobic008G171500 Sobic003G067201 Sobic003G067201 Sobic002G084400--Sobic003G067201 Sobic004G255300--Sobic002G111700 Sobic004G255300--Sobic003G203100 Sobic001G412200 Sobic001G412200 Sobic004G255300--Sobic001G412200 Sobic001G527600 Sobic001G527600 Sobic004G255300--Sobic001G527600 Sobic002G407800 Sobic002G407800 Sobic004G255300--Sobic002G407800 Sobic001G212200 Sobic001G212200 Sobic004G255300--Sobic001G212200 Sobic004G255300--Sobic010G232700 Sobic003G213800 Sobic003G213800 Sobic004G255300--Sobic003G213800 Sobic004G250100 Sobic004G250100 Sobic004G255300--Sobic004G250100 Sobic010G232700--Sobic002G084400 Sobic010G232700--Sobic008G041000 Sobic010G232700--Sobic006G085900 Sobic010G232700--Sobic008G171500 Sobic010G232700--Sobic003G203100 Sobic004G241000 Sobic004G241000 Sobic010G232700--Sobic004G241000 Sobic010G232700--Sobic006G069100 Sobic010G232700--Sobic005G028300 Sobic004G256900 Sobic004G256900 Sobic010G232700--Sobic004G256900 Sobic003G203100--Sobic010G232700 Sobic003G203100--Sobic008G041000 Sobic003G203100--Sobic006G085900 Sobic003G203100--Sobic002G084400 Sobic008G009300 Sobic008G009300 Sobic003G203100--Sobic008G009300 Sobic002G389200 Sobic002G389200 Sobic003G203100--Sobic002G389200 Sobic001G490700 Sobic001G490700 Sobic003G203100--Sobic001G490700 Sobic002G167400 Sobic002G167400 Sobic003G203100--Sobic002G167400 Sobic005G210700 Sobic005G210700 Sobic003G203100--Sobic005G210700 Sobic001G200600 Sobic001G200600 Sobic010G067000--Sobic001G200600 Sobic003G433600 Sobic003G433600 Sobic010G067000--Sobic003G433600 Sobic010G067000--Sobic008G009300 Sobic007G179500 Sobic007G179500 Sobic010G067000--Sobic007G179500 Sobic010G067000--Sobic004G250100 Sobic009G042500 Sobic009G042500 Sobic010G067000--Sobic009G042500 Sobic010G067000--Sobic002G111700 Sobic010G067000--Sobic003G203100 Sobic009G226000 Sobic009G226000 Sobic010G067000--Sobic009G226000 Sobic001G040600--Sobic007G060600 Sobic006G271900 Sobic006G271900 Sobic001G040600--Sobic006G271900 Sobic010G099300 Sobic010G099300 Sobic001G040600--Sobic010G099300 Sobic003G336500 Sobic003G336500 Sobic001G040600--Sobic003G336500 Sobic001G049800 Sobic001G049800 Sobic001G040600--Sobic001G049800 Sobic003G051500 Sobic003G051500 Sobic001G040600--Sobic003G051500 Sobic008G100400 Sobic008G100400 Sobic001G040600--Sobic008G100400 Sobic001G081300 Sobic001G081300 Sobic001G040600--Sobic001G081300 Sobic001G040600--Sobic002G251800 Sobic009G238700--Sobic007G060600 Sobic009G238700--Sobic001G081300 Sobic001G347100 Sobic001G347100 Sobic009G238700--Sobic001G347100 Sobic009G238700--Sobic001G040600 Sobic009G238700--Sobic001G049800 Sobic007G179600 Sobic007G179600 Sobic009G238700--Sobic007G179600 Sobic009G238700--Sobic006G271900 Sobic003G299200 Sobic003G299200 Sobic009G238700--Sobic003G299200 Sobic003G352100 Sobic003G352100 Sobic009G238700--Sobic003G352100 Sobic008G041000--Sobic002G084400 Sobic008G041000--Sobic010G232700 Sobic008G041000--Sobic006G085900 Sobic008G041000--Sobic003G203100 Sobic008G041000--Sobic005G028300 Sobic008G041000--Sobic002G251800 Sobic008G041000--Sobic002G389200 Sobic009G134400 Sobic009G134400 Sobic008G041000--Sobic009G134400 Sobic008G041000--Sobic006G069100 Sobic007G060600--Sobic001G049800 Sobic007G060600--Sobic001G040600 Sobic007G059700 Sobic007G059700 Sobic007G060600--Sobic007G059700 Sobic004G151000 Sobic004G151000 Sobic007G060600--Sobic004G151000 Sobic004G027300 Sobic004G027300 Sobic007G060600--Sobic004G027300 Sobic006G273900 Sobic006G273900 Sobic007G060600--Sobic006G273900 Sobic007G060600--Sobic009G238700 Sobic006G111200 Sobic006G111200 Sobic007G060600--Sobic006G111200 Sobic009G191500 Sobic009G191500 Sobic007G060600--Sobic009G191500
Octagon: transcription factors


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