Gene annotation
Transcriptome id Sobic.002G257600.1
Synonym Sb02g029280
Functional annotation PPR repeat containing protein, expressed
UniProt C5X4Q2
Pfam PF13041
Panther DB PTHR24015 PTHR24015:SF538
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G53330 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os05g11700.1 : PPR repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a047574
Brachypodium -
Barley HORVU6Hr1G009530.9 , HORVU6Hr1G009530.8 , HORVU6Hr1G009530.3 , HORVU6Hr1G009530.2 , HORVU6Hr1G009530.1 , HORVU6Hr1G009530.7 , HORVU6Hr1G009530.6 , HORVU6Hr1G009530.5 , HORVU6Hr1G009530.4 , HORVU6Hr1G009530.11 , HORVU6Hr1G009530.10
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G232500 - -
2 Sobic.001G159500 tesmin/TSO1-like CXC domain containing protein, expressed -
3 Sobic.004G312000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
4 Sobic.003G384750 - -
5 Sobic.001G444200 pentatricopeptide, putative, expressed -
6 Sobic.004G200100 leucine-rich repeat family protein, putative, expressed -
7 Sobic.003G394000 - -
8 Sobic.001G179500 OsFBX85 - F-box domain containing protein, expressed -
9 Sobic.001G069300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
10 Sobic.007G160050 - -
11 Sobic.007G136000 - -
12 Sobic.002G027901 - K10523: speckle-type POZ protein
13 Sobic.008G164000 OsFBX358 - F-box domain containing protein, expressed -
14 Sobic.005G067200 expressed protein -
15 Sobic.010G181701 - -
16 Sobic.004G234000 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
17 Sobic.009G170900 ATCHX15, putative, expressed -
18 Sobic.008G057200 amino acid transporter, putative, expressed -
19 Sobic.009G212900 myosin head family protein, expressed K10357: myosin V
20 Sobic.003G047400 pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic002G257600 Sobic002G257600 Sobic003G232500 Sobic003G232500 Sobic002G257600--Sobic003G232500 Sobic001G159500 Sobic001G159500 Sobic002G257600--Sobic001G159500 Sobic004G312000 Sobic004G312000 Sobic002G257600--Sobic004G312000 Sobic003G384750 Sobic003G384750 Sobic002G257600--Sobic003G384750 Sobic001G444200 Sobic001G444200 Sobic002G257600--Sobic001G444200 Sobic004G200100 Sobic004G200100 Sobic002G257600--Sobic004G200100 Sobic003G394000 Sobic003G394000 Sobic002G257600--Sobic003G394000 Sobic001G179500 Sobic001G179500 Sobic002G257600--Sobic001G179500 Sobic001G069300 Sobic001G069300 Sobic002G257600--Sobic001G069300 Sobic003G232500--Sobic001G179500 Sobic003G232500--Sobic004G200100 Sobic003G232500--Sobic003G394000 Sobic003G232500--Sobic003G384750 Sobic004G234000 Sobic004G234000 Sobic003G232500--Sobic004G234000 Sobic009G170900 Sobic009G170900 Sobic003G232500--Sobic009G170900 Sobic007G136000 Sobic007G136000 Sobic003G232500--Sobic007G136000 Sobic008G057200 Sobic008G057200 Sobic003G232500--Sobic008G057200 Sobic002G027901 Sobic002G027901 Sobic003G232500--Sobic002G027901 Sobic001G159500--Sobic003G384750 Sobic007G160050 Sobic007G160050 Sobic001G159500--Sobic007G160050 Sobic003G047400 Sobic003G047400 Sobic001G159500--Sobic003G047400 Sobic001G159500--Sobic001G444200 Sobic003G413550 Sobic003G413550 Sobic001G159500--Sobic003G413550 Sobic004G145550 Sobic004G145550 Sobic001G159500--Sobic004G145550 Sobic001G159500--Sobic003G232500 Sobic001G159500--Sobic008G057200 Sobic009G174800 Sobic009G174800 Sobic001G159500--Sobic009G174800 Sobic004G312000--Sobic003G047400 Sobic004G312000--Sobic001G444200 Sobic007G107800 Sobic007G107800 Sobic004G312000--Sobic007G107800 Sobic004G312000--Sobic001G159500 Sobic005G100500 Sobic005G100500 Sobic004G312000--Sobic005G100500 Sobic001G332933 Sobic001G332933 Sobic004G312000--Sobic001G332933 Sobic004G312000--Sobic002G257600 Sobic004G312000--Sobic004G145550 Sobic010G148100 Sobic010G148100 Sobic004G312000--Sobic010G148100 Sobic003G384750--Sobic009G174800 Sobic002G408400 Sobic002G408400 Sobic003G384750--Sobic002G408400 Sobic003G384750--Sobic004G145550 Sobic006G244200 Sobic006G244200 Sobic003G384750--Sobic006G244200 Sobic003G384750--Sobic007G160050 Sobic003G384750--Sobic008G057200 Sobic003G370800 Sobic003G370800 Sobic003G384750--Sobic003G370800 Sobic009G143600 Sobic009G143600 Sobic003G384750--Sobic009G143600 Sobic003G384750--Sobic001G159500 Sobic001G444200--Sobic007G160050 Sobic001G444200--Sobic003G384750 Sobic004G208800 Sobic004G208800 Sobic001G444200--Sobic004G208800 Sobic001G444200--Sobic001G159500 Sobic001G201933 Sobic001G201933 Sobic001G444200--Sobic001G201933 Sobic001G444200--Sobic003G047400 Sobic001G444200--Sobic004G145550 Sobic001G395600 Sobic001G395600 Sobic001G444200--Sobic001G395600 Sobic003G139600 Sobic003G139600 Sobic001G444200--Sobic003G139600 Sobic004G200100--Sobic003G394000 Sobic004G200100--Sobic009G170900 Sobic004G200100--Sobic007G136000 Sobic004G200100--Sobic004G234000 Sobic002G381800 Sobic002G381800 Sobic004G200100--Sobic002G381800 Sobic005G160801 Sobic005G160801 Sobic004G200100--Sobic005G160801 Sobic010G082300 Sobic010G082300 Sobic004G200100--Sobic010G082300 Sobic004G060400 Sobic004G060400 Sobic004G200100--Sobic004G060400 Sobic004G348000 Sobic004G348000 Sobic004G200100--Sobic004G348000 Sobic003G394000--Sobic004G200100 Sobic003G406060 Sobic003G406060 Sobic003G394000--Sobic003G406060 Sobic005G200100 Sobic005G200100 Sobic003G394000--Sobic005G200100 Sobic001G251000 Sobic001G251000 Sobic003G394000--Sobic001G251000 Sobic010G074000 Sobic010G074000 Sobic003G394000--Sobic010G074000 Sobic003G394000--Sobic004G060400 Sobic003G394000--Sobic002G027901 Sobic003G394000--Sobic004G348000 Sobic003G254200 Sobic003G254200 Sobic003G394000--Sobic003G254200 Sobic001G129150 Sobic001G129150 Sobic001G179500--Sobic001G129150 Sobic005G049900 Sobic005G049900 Sobic001G179500--Sobic005G049900 Sobic005G161400 Sobic005G161400 Sobic001G179500--Sobic005G161400 Sobic006G042900 Sobic006G042900 Sobic001G179500--Sobic006G042900 Sobic002G298201 Sobic002G298201 Sobic001G179500--Sobic002G298201 Sobic005G147900 Sobic005G147900 Sobic001G179500--Sobic005G147900 Sobic009G125100 Sobic009G125100 Sobic001G179500--Sobic009G125100 Sobic001G179500--Sobic002G027901 Sobic006G232700 Sobic006G232700 Sobic001G179500--Sobic006G232700 Sobic001G069300--Sobic002G257600 Sobic002G136300 Sobic002G136300 Sobic001G069300--Sobic002G136300 Sobic003G203100 Sobic003G203100 Sobic001G069300--Sobic003G203100 Sobic002G358900 Sobic002G358900 Sobic001G069300--Sobic002G358900 Sobic001G069300--Sobic004G312000 Sobic004G046001 Sobic004G046001 Sobic001G069300--Sobic004G046001 Sobic005G124850 Sobic005G124850 Sobic001G069300--Sobic005G124850 Sobic002G037900 Sobic002G037900 Sobic001G069300--Sobic002G037900 Sobic004G346200 Sobic004G346200 Sobic001G069300--Sobic004G346200
Octagon: transcription factors


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