Gene annotation
Transcriptome id Sobic.005G067200.2,Sobic.005G067200.3,Sobic.005G067200.4,Sobic.005G067200.1
Synonym Sb05g005700
Functional annotation expressed protein
UniProt A0A1Z5RGZ2 , A0A1Z5RHY5 , A0A1Z5RH32 , A0A1Z5RH12
Pfam PF00400
Panther DB PTHR14221 PTHR14221:SF9
NCBI CDD KOG0283; WD40 repeat-containing protein KOG0645WD40 repeat protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G54200 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os11g08400.1 : expressed protein
MaizeGDB (Corn) Zm00025a054064 , Zm00025a034052
Brachypodium KQJ89109 , PNT64014
Barley HORVU4Hr1G017640.1 , HORVU4Hr1G017640.2 , HORVU4Hr1G017640.3 , HORVU4Hr1G017640.4 , HORVU4Hr1G017640.5 , HORVU4Hr1G017640.6
Wheat TraesCS4A02G221200 , TraesCS4B02G099600 , TraesCS4B02G099600 , TraesCS4D02G095600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G403000 "major aluminum tolerance, s a plasma membrane anion efflux transporter responsible for citrate release into the rhizosphere"(PubMedID : 17721535)@Aluminum tolerance(PubMedID : 17721535)@MATE efflux protein, putative, expressed -
2 Sobic.007G136000 - -
3 Sobic.002G068701 - K00472: prolyl 4-hydroxylase
4 Sobic.009G044200 C2 domain containing protein, putative, expressed -
5 Sobic.004G218200 "domain confirmed by Pfam database, expression supported by NCBI EST database"(PubMedID : 20499123)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@CPuORF40 - conserved peptide uORF-containing transcript, expressed -
6 Sobic.004G281500 fringe-related protein, putative, expressed -
7 Sobic.001G407300 expressed protein -
8 Sobic.010G279600 ZOS2-19 - C2H2 zinc finger protein, expressed -
9 Sobic.004G200100 leucine-rich repeat family protein, putative, expressed -
10 Sobic.004G289100 OsSub20 - Putative Subtilisin homologue, expressed -
11 Sobic.010G200600 nitrate-induced NOI protein, expressed -
12 Sobic.005G027250 - -
13 Sobic.010G032200 expressed protein -
14 Sobic.009G030001 - -
15 Sobic.004G008500 - -
16 Sobic.001G152800 pollen preferential protein, putative, expressed -
17 Sobic.006G099200 pollen allergen Cyn d 23, putative, expressed -
18 Sobic.005G160801 - -
19 Sobic.009G186900 UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
20 Sobic.004G338900 P21-Rho-binding domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic005G067200 Sobic005G067200 Sobic003G403000 Sobic003G403000 Sobic005G067200--Sobic003G403000 Sobic007G136000 Sobic007G136000 Sobic005G067200--Sobic007G136000 Sobic002G068701 Sobic002G068701 Sobic005G067200--Sobic002G068701 Sobic009G044200 Sobic009G044200 Sobic005G067200--Sobic009G044200 Sobic004G218200 Sobic004G218200 Sobic005G067200--Sobic004G218200 Sobic004G281500 Sobic004G281500 Sobic005G067200--Sobic004G281500 Sobic001G407300 Sobic001G407300 Sobic005G067200--Sobic001G407300 Sobic010G279600 Sobic010G279600 Sobic005G067200--Sobic010G279600 Sobic004G200100 Sobic004G200100 Sobic005G067200--Sobic004G200100 Sobic003G403000--Sobic005G067200 Sobic003G403000--Sobic009G044200 Sobic003G403000--Sobic002G068701 Sobic010G200600 Sobic010G200600 Sobic003G403000--Sobic010G200600 Sobic004G289100 Sobic004G289100 Sobic003G403000--Sobic004G289100 Sobic005G027250 Sobic005G027250 Sobic003G403000--Sobic005G027250 Sobic009G030001 Sobic009G030001 Sobic003G403000--Sobic009G030001 Sobic003G403000--Sobic004G218200 Sobic003G403000--Sobic004G281500 Sobic009G170900 Sobic009G170900 Sobic007G136000--Sobic009G170900 Sobic005G160801 Sobic005G160801 Sobic007G136000--Sobic005G160801 Sobic007G136000--Sobic004G200100 Sobic007G136000--Sobic005G067200 Sobic003G078000 Sobic003G078000 Sobic007G136000--Sobic003G078000 Sobic006G189600 Sobic006G189600 Sobic007G136000--Sobic006G189600 Sobic003G406060 Sobic003G406060 Sobic007G136000--Sobic003G406060 Sobic005G198600 Sobic005G198600 Sobic007G136000--Sobic005G198600 Sobic003G394000 Sobic003G394000 Sobic007G136000--Sobic003G394000 Sobic002G068701--Sobic009G044200 Sobic002G068701--Sobic005G027250 Sobic006G099200 Sobic006G099200 Sobic002G068701--Sobic006G099200 Sobic010G032200 Sobic010G032200 Sobic002G068701--Sobic010G032200 Sobic002G068701--Sobic003G403000 Sobic001G345300 Sobic001G345300 Sobic002G068701--Sobic001G345300 Sobic004G338900 Sobic004G338900 Sobic002G068701--Sobic004G338900 Sobic002G068701--Sobic005G067200 Sobic007G204800 Sobic007G204800 Sobic002G068701--Sobic007G204800 Sobic009G044200--Sobic005G027250 Sobic009G044200--Sobic006G099200 Sobic009G044200--Sobic004G338900 Sobic005G125200 Sobic005G125200 Sobic009G044200--Sobic005G125200 Sobic002G160200 Sobic002G160200 Sobic009G044200--Sobic002G160200 Sobic009G044200--Sobic007G204800 Sobic001G160900 Sobic001G160900 Sobic009G044200--Sobic001G160900 Sobic002G083100 Sobic002G083100 Sobic009G044200--Sobic002G083100 Sobic009G044200--Sobic010G032200 Sobic004G218200--Sobic010G200600 Sobic004G218200--Sobic005G067200 Sobic004G218200--Sobic003G403000 Sobic007G195900 Sobic007G195900 Sobic004G218200--Sobic007G195900 Sobic005G152550 Sobic005G152550 Sobic004G218200--Sobic005G152550 Sobic010G037701 Sobic010G037701 Sobic004G218200--Sobic010G037701 Sobic003G154900 Sobic003G154900 Sobic004G218200--Sobic003G154900 Sobic004G218200--Sobic007G136000 Sobic002G084200 Sobic002G084200 Sobic004G218200--Sobic002G084200 Sobic004G281500--Sobic004G289100 Sobic009G072600 Sobic009G072600 Sobic004G281500--Sobic009G072600 Sobic007G166500 Sobic007G166500 Sobic004G281500--Sobic007G166500 Sobic001G152800 Sobic001G152800 Sobic004G281500--Sobic001G152800 Sobic003G434100 Sobic003G434100 Sobic004G281500--Sobic003G434100 Sobic002G029000 Sobic002G029000 Sobic004G281500--Sobic002G029000 Sobic004G281500--Sobic010G279600 Sobic005G199800 Sobic005G199800 Sobic004G281500--Sobic005G199800 Sobic002G323200 Sobic002G323200 Sobic004G281500--Sobic002G323200 Sobic010G261900 Sobic010G261900 Sobic001G407300--Sobic010G261900 Sobic001G407300--Sobic010G279600 Sobic001G407300--Sobic004G289100 Sobic001G407300--Sobic004G281500 Sobic001G407300--Sobic009G044200 Sobic001G407300--Sobic001G152800 Sobic004G008500 Sobic004G008500 Sobic001G407300--Sobic004G008500 Sobic001G407300--Sobic005G067200 Sobic003G211000 Sobic003G211000 Sobic001G407300--Sobic003G211000 Sobic010G279600--Sobic004G008500 Sobic010G063700 Sobic010G063700 Sobic010G279600--Sobic010G063700 Sobic010G279600--Sobic001G152800 Sobic010G279600--Sobic010G261900 Sobic010G279600--Sobic007G166500 Sobic010G016100 Sobic010G016100 Sobic010G279600--Sobic010G016100 Sobic001G445400 Sobic001G445400 Sobic010G279600--Sobic001G445400 Sobic010G279600--Sobic002G029000 Sobic010G279600--Sobic004G289100 Sobic004G200100--Sobic003G394000 Sobic004G200100--Sobic009G170900 Sobic004G200100--Sobic007G136000 Sobic004G234000 Sobic004G234000 Sobic004G200100--Sobic004G234000 Sobic002G381800 Sobic002G381800 Sobic004G200100--Sobic002G381800 Sobic004G200100--Sobic005G160801 Sobic010G082300 Sobic010G082300 Sobic004G200100--Sobic010G082300 Sobic004G060400 Sobic004G060400 Sobic004G200100--Sobic004G060400 Sobic004G348000 Sobic004G348000 Sobic004G200100--Sobic004G348000
Octagon: transcription factors


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