Gene annotation
Transcriptome id Sobic.007G202000.2,Sobic.007G202000.1
Synonym Sb07g026940
Functional annotation pumilio domain-containing protein PPD1, putative, expressed
UniProt C5YIA1
Pfam PF04783 PF04782
Panther DB PTHR21450 PTHR21450:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G19090 : Protein of unknown function (DUF630 and DUF632)
RAP-DB (Rice) LOC_Os08g40830.1,LOC_Os08g40830.2 : pumilio domain-containing protein PPD1, putative, expressed
MaizeGDB (Corn) Zm00025a030348 , Zm00025a005163
Brachypodium PNT68433 , PNT68432
Barley HORVU7Hr1G052210.23 , HORVU7Hr1G052210.19 , HORVU7Hr1G052210.18 , HORVU7Hr1G052210.17 , HORVU7Hr1G052210.16 , HORVU7Hr1G052210.15 , HORVU7Hr1G052210.14 , HORVU7Hr1G052210.13 , HORVU7Hr1G052210.12 , HORVU7Hr1G052210.11 , HORVU7Hr1G052210.10 , HORVU7Hr1G052210.7 , HORVU7Hr1G052210.6 , HORVU7Hr1G052210.5 , HORVU7Hr1G052210.4 , HORVU7Hr1G052210.3 , HORVU7Hr1G052210.2 , HORVU7Hr1G052210.1 , HORVU7Hr1G052210.9 , HORVU7Hr1G052210.8 , HORVU7Hr1G052210.22 , HORVU7Hr1G052210.20 , HORVU7Hr1G052210.21
Wheat TraesCS7D02G251500 , TraesCS7D02G251500 , TraesCS7B02G137800 , TraesCS7A02G252800 , TraesCS7A02G252800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.007G202000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G103000 expressed protein -
2 Sobic.001G528000 SNARE domain containing protein, putative, expressed K08503: syntaxin of plants SYP5
3 Sobic.003G399166 - -
4 Sobic.004G078400 leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed -
5 Sobic.005G163450 - -
6 Sobic.007G075200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@bifunctional purine biosynthesis protein purH, putative, expressed K00602: phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase
7 Sobic.003G289000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@3-5 exonuclease domain-containing protein, putative, expressed -
8 Sobic.007G120100 ABC transporter, ATP-binding protein, putative, expressed -
9 Sobic.005G156800 UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
10 Sobic.002G380750 - -
11 Sobic.002G213050 - -
12 Sobic.003G049100 prolyl 4-hydroxylase, putative, expressed K00472: prolyl 4-hydroxylase
13 Sobic.006G261000 cytochrome P450, putative, expressed -
14 Sobic.001G267950 - -
15 Sobic.003G303000 nucleobase-ascorbate transporter, putative, expressed K14611: SLC23A1, solute carrier family 23 (nucleobase transporter), member 1
16 Sobic.003G063600 expressed protein -
17 Sobic.005G199500 OsFBL58 - F-box domain and LRR containing protein, expressed -
18 Sobic.003G051900 - -
19 Sobic.001G452400 OsFBX81 - F-box domain containing protein, expressed -
20 Sobic.003G188900 expressed protein -


Gene co-expression network
sample Sobic007G202000 Sobic007G202000 Sobic010G103000 Sobic010G103000 Sobic007G202000--Sobic010G103000 Sobic001G528000 Sobic001G528000 Sobic007G202000--Sobic001G528000 Sobic003G399166 Sobic003G399166 Sobic007G202000--Sobic003G399166 Sobic004G078400 Sobic004G078400 Sobic007G202000--Sobic004G078400 Sobic005G163450 Sobic005G163450 Sobic007G202000--Sobic005G163450 Sobic007G075200 Sobic007G075200 Sobic007G202000--Sobic007G075200 Sobic003G289000 Sobic003G289000 Sobic007G202000--Sobic003G289000 Sobic007G120100 Sobic007G120100 Sobic007G202000--Sobic007G120100 Sobic005G156800 Sobic005G156800 Sobic007G202000--Sobic005G156800 Sobic010G103000--Sobic007G075200 Sobic006G261000 Sobic006G261000 Sobic010G103000--Sobic006G261000 Sobic002G213050 Sobic002G213050 Sobic010G103000--Sobic002G213050 Sobic010G103000--Sobic001G528000 Sobic010G103000--Sobic004G078400 Sobic003G049100 Sobic003G049100 Sobic010G103000--Sobic003G049100 Sobic003G188900 Sobic003G188900 Sobic010G103000--Sobic003G188900 Sobic006G053500 Sobic006G053500 Sobic010G103000--Sobic006G053500 Sobic005G199500 Sobic005G199500 Sobic010G103000--Sobic005G199500 Sobic001G267950 Sobic001G267950 Sobic001G528000--Sobic001G267950 Sobic001G528000--Sobic005G199500 Sobic001G528000--Sobic007G075200 Sobic001G528000--Sobic006G261000 Sobic006G018500 Sobic006G018500 Sobic001G528000--Sobic006G018500 Sobic001G528000--Sobic003G049100 Sobic007G005800 Sobic007G005800 Sobic001G528000--Sobic007G005800 Sobic001G497750 Sobic001G497750 Sobic001G528000--Sobic001G497750 Sobic001G493300 Sobic001G493300 Sobic001G528000--Sobic001G493300 Sobic003G399166--Sobic005G163450 Sobic001G307450 Sobic001G307450 Sobic003G399166--Sobic001G307450 Sobic003G399166--Sobic005G156800 Sobic002G380750 Sobic002G380750 Sobic003G399166--Sobic002G380750 Sobic003G399166--Sobic007G120100 Sobic003G063600 Sobic003G063600 Sobic003G399166--Sobic003G063600 Sobic001G452400 Sobic001G452400 Sobic003G399166--Sobic001G452400 Sobic003G291050 Sobic003G291050 Sobic003G399166--Sobic003G291050 Sobic003G303000 Sobic003G303000 Sobic003G399166--Sobic003G303000 Sobic004G078400--Sobic010G103000 Sobic010G129900 Sobic010G129900 Sobic004G078400--Sobic010G129900 Sobic004G078400--Sobic003G188900 Sobic007G069750 Sobic007G069750 Sobic004G078400--Sobic007G069750 Sobic004G078400--Sobic005G199500 Sobic001G112300 Sobic001G112300 Sobic004G078400--Sobic001G112300 Sobic004G078400--Sobic002G213050 Sobic001G221750 Sobic001G221750 Sobic004G078400--Sobic001G221750 Sobic004G055400 Sobic004G055400 Sobic004G078400--Sobic004G055400 Sobic005G163450--Sobic003G399166 Sobic005G163450--Sobic005G156800 Sobic005G163450--Sobic002G380750 Sobic005G163450--Sobic001G307450 Sobic005G163450--Sobic007G120100 Sobic005G163450--Sobic001G452400 Sobic005G163450--Sobic003G303000 Sobic005G163450--Sobic003G063600 Sobic005G163450--Sobic003G291050 Sobic007G075200--Sobic006G261000 Sobic009G214700 Sobic009G214700 Sobic007G075200--Sobic009G214700 Sobic008G192200 Sobic008G192200 Sobic007G075200--Sobic008G192200 Sobic003G091100 Sobic003G091100 Sobic007G075200--Sobic003G091100 SobicK042700 SobicK042700 Sobic007G075200--SobicK042700 Sobic001G272300 Sobic001G272300 Sobic007G075200--Sobic001G272300 Sobic005G082000 Sobic005G082000 Sobic003G289000--Sobic005G082000 Sobic003G289000--Sobic003G063600 Sobic004G289700 Sobic004G289700 Sobic003G289000--Sobic004G289700 Sobic003G289000--Sobic005G156800 Sobic003G289000--Sobic002G380750 Sobic003G289000--Sobic005G163450 Sobic003G289000--Sobic001G452400 Sobic003G058400 Sobic003G058400 Sobic003G289000--Sobic003G058400 Sobic003G289000--Sobic003G049100 Sobic007G120100--Sobic002G380750 Sobic007G120100--Sobic005G156800 Sobic007G120100--Sobic001G452400 Sobic002G035766 Sobic002G035766 Sobic007G120100--Sobic002G035766 Sobic010G021600 Sobic010G021600 Sobic007G120100--Sobic010G021600 Sobic007G120100--Sobic001G493300 Sobic007G120100--Sobic001G272300 Sobic005G156800--Sobic002G380750 Sobic005G156800--Sobic001G452400 Sobic005G156800--Sobic010G021600 Sobic005G156800--Sobic001G493300 Sobic005G156800--Sobic001G272300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.