Gene annotation
Transcriptome id Sobic.003G399166.1
Synonym -
Functional annotation -
UniProt A0A1W0W136
Pfam PF00319
Panther DB PTHR11945 PTHR11945:SF226
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT1G31630 : AGAMOUS-like 86
RAP-DB (Rice) LOC_Os01g68560.1 : OsMADS98 - MADS-box family gene with M-beta type-box, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G163450 - -
2 Sobic.001G307450 - -
3 Sobic.005G156800 UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
4 Sobic.002G380750 - -
5 Sobic.007G120100 ABC transporter, ATP-binding protein, putative, expressed -
6 Sobic.003G063600 expressed protein -
7 Sobic.001G452400 OsFBX81 - F-box domain containing protein, expressed -
8 Sobic.003G291050 - -
9 Sobic.003G303000 nucleobase-ascorbate transporter, putative, expressed K14611: SLC23A1, solute carrier family 23 (nucleobase transporter), member 1
10 Sobic.003G289000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@3-5 exonuclease domain-containing protein, putative, expressed -
11 Sobic.010G021600 - -
12 Sobic.003G051900 - -
13 Sobic.003G141550 - -
14 Sobic.007G147000 protein binding protein, putative, expressed K11975: E3 ubiquitin-protein ligase RNF144
15 Sobic.001G493300 glycerol-3-phosphate acyltransferase, putative, expressed -
16 Sobic.003G058400 annexin, putative, expressed -
17 Sobic.004G289700 C2 domain containing protein, putative, expressed -
18 Sobic.003G049100 prolyl 4-hydroxylase, putative, expressed K00472: prolyl 4-hydroxylase
19 Sobic.005G082950 - -
20 Sobic.001G272300 OsFBX356 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic003G399166 Sobic003G399166 Sobic005G163450 Sobic005G163450 Sobic003G399166--Sobic005G163450 Sobic001G307450 Sobic001G307450 Sobic003G399166--Sobic001G307450 Sobic005G156800 Sobic005G156800 Sobic003G399166--Sobic005G156800 Sobic002G380750 Sobic002G380750 Sobic003G399166--Sobic002G380750 Sobic007G120100 Sobic007G120100 Sobic003G399166--Sobic007G120100 Sobic003G063600 Sobic003G063600 Sobic003G399166--Sobic003G063600 Sobic001G452400 Sobic001G452400 Sobic003G399166--Sobic001G452400 Sobic003G291050 Sobic003G291050 Sobic003G399166--Sobic003G291050 Sobic003G303000 Sobic003G303000 Sobic003G399166--Sobic003G303000 Sobic005G163450--Sobic003G399166 Sobic005G163450--Sobic005G156800 Sobic005G163450--Sobic002G380750 Sobic005G163450--Sobic001G307450 Sobic005G163450--Sobic007G120100 Sobic005G163450--Sobic001G452400 Sobic005G163450--Sobic003G303000 Sobic005G163450--Sobic003G063600 Sobic005G163450--Sobic003G291050 Sobic001G307450--Sobic005G163450 Sobic001G307450--Sobic003G399166 Sobic001G307450--Sobic005G156800 Sobic001G307450--Sobic002G380750 Sobic001G307450--Sobic003G291050 Sobic004G338400 Sobic004G338400 Sobic001G307450--Sobic004G338400 Sobic001G307450--Sobic001G452400 Sobic001G307450--Sobic007G120100 Sobic010G021600 Sobic010G021600 Sobic001G307450--Sobic010G021600 Sobic005G156800--Sobic002G380750 Sobic005G156800--Sobic001G452400 Sobic005G156800--Sobic010G021600 Sobic001G493300 Sobic001G493300 Sobic005G156800--Sobic001G493300 Sobic001G272300 Sobic001G272300 Sobic005G156800--Sobic001G272300 Sobic002G380750--Sobic005G156800 Sobic002G380750--Sobic001G452400 Sobic002G380750--Sobic010G021600 Sobic002G380750--Sobic001G493300 Sobic002G380750--Sobic001G272300 Sobic007G120100--Sobic002G380750 Sobic007G120100--Sobic005G156800 Sobic007G120100--Sobic001G452400 Sobic002G035766 Sobic002G035766 Sobic007G120100--Sobic002G035766 Sobic007G120100--Sobic010G021600 Sobic007G120100--Sobic001G493300 Sobic007G120100--Sobic001G272300 Sobic003G063600--Sobic001G493300 Sobic003G058400 Sobic003G058400 Sobic003G063600--Sobic003G058400 Sobic004G289700 Sobic004G289700 Sobic003G063600--Sobic004G289700 Sobic003G063600--Sobic001G452400 Sobic003G141550 Sobic003G141550 Sobic003G063600--Sobic003G141550 Sobic004G196000 Sobic004G196000 Sobic003G063600--Sobic004G196000 Sobic008G192100 Sobic008G192100 Sobic003G063600--Sobic008G192100 Sobic008G192200 Sobic008G192200 Sobic003G063600--Sobic008G192200 Sobic002G081000 Sobic002G081000 Sobic003G063600--Sobic002G081000 Sobic001G452400--Sobic002G380750 Sobic001G452400--Sobic001G272300 Sobic002G057550 Sobic002G057550 Sobic003G291050--Sobic002G057550 Sobic004G048600 Sobic004G048600 Sobic003G291050--Sobic004G048600 Sobic003G291050--Sobic001G452400 Sobic003G291050--Sobic002G380750 Sobic003G291050--Sobic005G156800 Sobic002G302400 Sobic002G302400 Sobic003G291050--Sobic002G302400 Sobic003G291050--Sobic008G192100 Sobic003G291050--Sobic001G272300 Sobic003G429101 Sobic003G429101 Sobic003G303000--Sobic003G429101 Sobic003G303000--Sobic005G163450 Sobic006G261000 Sobic006G261000 Sobic003G303000--Sobic006G261000 Sobic001G388100 Sobic001G388100 Sobic003G303000--Sobic001G388100 Sobic003G241400 Sobic003G241400 Sobic003G303000--Sobic003G241400 Sobic003G303000--Sobic005G156800 Sobic003G303000--Sobic002G380750 Sobic004G041000 Sobic004G041000 Sobic003G303000--Sobic004G041000 Sobic009G214700 Sobic009G214700 Sobic003G303000--Sobic009G214700
Octagon: transcription factors


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