Gene annotation
Transcriptome id Sobic.003G289000.1
Synonym Sb03g033960, WRNEXO, ATWRNEXO, WEX, ATWEX
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
3-5 exonuclease domain-containing protein, putative, expressed
UniProt C5XJ62
Pfam PF01612
Panther DB PTHR13620 PTHR13620:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008408; 3'-5' exonuclease activity GO:0006139nucleobase-containing compound metabolic process GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G13870 : Werner syndrome-like exonuclease
RAP-DB (Rice) LOC_Os04g14810.1 : 3-5 exonuclease domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a027679
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G082000 DEFL8 - Defensin and Defensin-like DEFL family -
2 Sobic.003G063600 expressed protein -
3 Sobic.004G289700 C2 domain containing protein, putative, expressed -
4 Sobic.005G156800 UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
5 Sobic.002G380750 - -
6 Sobic.005G163450 - -
7 Sobic.001G452400 OsFBX81 - F-box domain containing protein, expressed -
8 Sobic.003G058400 annexin, putative, expressed -
9 Sobic.003G049100 prolyl 4-hydroxylase, putative, expressed K00472: prolyl 4-hydroxylase
10 Sobic.010G021600 - -
11 Sobic.001G493300 glycerol-3-phosphate acyltransferase, putative, expressed -
12 Sobic.008G154000 helix-loop-helix DNA-binding domain containing protein, expressed -
13 Sobic.002G081000 OsMADS70 - MADS-box family gene with M-alpha type-box, expressed -
14 Sobic.007G120100 ABC transporter, ATP-binding protein, putative, expressed -
15 Sobic.004G082200 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
16 Sobic.003G034250 - -
17 Sobic.001G218701 - -
18 Sobic.003G399166 - -
19 Sobic.001G272300 OsFBX356 - F-box domain containing protein, expressed -
20 Sobic.001G272300 OsFBX356 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic003G289000 Sobic003G289000 Sobic005G082000 Sobic005G082000 Sobic003G289000--Sobic005G082000 Sobic003G063600 Sobic003G063600 Sobic003G289000--Sobic003G063600 Sobic004G289700 Sobic004G289700 Sobic003G289000--Sobic004G289700 Sobic005G156800 Sobic005G156800 Sobic003G289000--Sobic005G156800 Sobic002G380750 Sobic002G380750 Sobic003G289000--Sobic002G380750 Sobic005G163450 Sobic005G163450 Sobic003G289000--Sobic005G163450 Sobic001G452400 Sobic001G452400 Sobic003G289000--Sobic001G452400 Sobic003G058400 Sobic003G058400 Sobic003G289000--Sobic003G058400 Sobic003G049100 Sobic003G049100 Sobic003G289000--Sobic003G049100 Sobic005G082000--Sobic004G289700 Sobic005G082000--Sobic003G063600 Sobic005G082000--Sobic003G058400 Sobic001G272300 Sobic001G272300 Sobic005G082000--Sobic001G272300 Sobic001G493300 Sobic001G493300 Sobic003G063600--Sobic001G493300 Sobic003G063600--Sobic003G058400 Sobic003G063600--Sobic004G289700 Sobic003G063600--Sobic001G452400 Sobic003G141550 Sobic003G141550 Sobic003G063600--Sobic003G141550 Sobic004G196000 Sobic004G196000 Sobic003G063600--Sobic004G196000 Sobic008G192100 Sobic008G192100 Sobic003G063600--Sobic008G192100 Sobic008G192200 Sobic008G192200 Sobic003G063600--Sobic008G192200 Sobic002G081000 Sobic002G081000 Sobic003G063600--Sobic002G081000 Sobic004G289700--Sobic003G058400 Sobic007G100275 Sobic007G100275 Sobic004G289700--Sobic007G100275 Sobic009G150100 Sobic009G150100 Sobic004G289700--Sobic009G150100 Sobic003G091100 Sobic003G091100 Sobic004G289700--Sobic003G091100 SobicK042700 SobicK042700 Sobic004G289700--SobicK042700 Sobic004G289700--Sobic001G272300 Sobic005G156800--Sobic002G380750 Sobic005G156800--Sobic001G452400 Sobic010G021600 Sobic010G021600 Sobic005G156800--Sobic010G021600 Sobic005G156800--Sobic001G493300 Sobic005G156800--Sobic001G272300 Sobic002G380750--Sobic005G156800 Sobic002G380750--Sobic001G452400 Sobic002G380750--Sobic010G021600 Sobic002G380750--Sobic001G493300 Sobic002G380750--Sobic001G272300 Sobic003G399166 Sobic003G399166 Sobic005G163450--Sobic003G399166 Sobic005G163450--Sobic005G156800 Sobic005G163450--Sobic002G380750 Sobic001G307450 Sobic001G307450 Sobic005G163450--Sobic001G307450 Sobic007G120100 Sobic007G120100 Sobic005G163450--Sobic007G120100 Sobic005G163450--Sobic001G452400 Sobic003G303000 Sobic003G303000 Sobic005G163450--Sobic003G303000 Sobic005G163450--Sobic003G063600 Sobic003G291050 Sobic003G291050 Sobic005G163450--Sobic003G291050 Sobic001G452400--Sobic002G380750 Sobic001G452400--Sobic001G272300 Sobic003G058400--Sobic001G272300 Sobic001G218701 Sobic001G218701 Sobic003G049100--Sobic001G218701 Sobic003G049100--Sobic002G081000 Sobic003G049100--Sobic003G058400 Sobic003G049100--Sobic008G192200 Sobic003G049100--Sobic001G272300
Octagon: transcription factors


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