Gene annotation
Transcriptome id Sobic.007G147000.1
Synonym Sb07g022160
Functional annotation protein binding protein, putative, expressed
UniProt C5YLS5
Pfam PF01485
Panther DB PTHR11685 PTHR11685:SF142
NCBI CDD -
KEGG Orthology K11975; E3 ubiquitin-protein ligase RNF144
Gene Ontology GO:0016567; protein ubiquitination GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT3G14250 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os08g35060.1 : protein binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a030732
Brachypodium KQJ98527
Barley HORVU2Hr1G116340.1 , HORVU2Hr1G116300.5 , HORVU2Hr1G116300.4 , HORVU2Hr1G116300.3
Wheat TraesCS2D02G529800 , TraesCS2B02G557600 , TraesCS2A02G527000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G163450 - -
2 Sobic.003G399166 - -
3 Sobic.002G168100 Plant PDR ABC transporter associated domain containing protein, expressed -
4 Sobic.001G307450 - -
5 Sobic.007G188400 expressed protein -
6 Sobic.001G511800 expressed protein -
7 Sobic.005G156800 UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
8 Sobic.002G380750 - -
9 Sobic.007G107200 ankyrin repeat family protein, putative, expressed -
10 Sobic.001G543000 glycosyl hydrolase, putative, expressed K01183: chitinase
11 Sobic.007G135700 "Increasing Grain number per panicle, TCP (Teosinte branched/Cycloidea/PCF) transcription factor"(PubMedID : 29483511)@CYC/tb1-like (ClassII) Subclade 19 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
12 Sobic.007G120100 ABC transporter, ATP-binding protein, putative, expressed -
13 Sobic.010G062950 - -
14 Sobic.003G303000 nucleobase-ascorbate transporter, putative, expressed K14611: SLC23A1, solute carrier family 23 (nucleobase transporter), member 1
15 Sobic.001G452400 OsFBX81 - F-box domain containing protein, expressed -
16 Sobic.003G235900 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
17 Sobic.006G201350 - -
18 Sobic.010G021600 - -
19 Sobic.003G291050 - -
20 Sobic.004G338400 "TH1(Ortholog in rice:Li et al., 2012)"(PubMedID : 31659894)@DUF640 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic007G147000 Sobic007G147000 Sobic005G163450 Sobic005G163450 Sobic007G147000--Sobic005G163450 Sobic003G399166 Sobic003G399166 Sobic007G147000--Sobic003G399166 Sobic002G168100 Sobic002G168100 Sobic007G147000--Sobic002G168100 Sobic001G307450 Sobic001G307450 Sobic007G147000--Sobic001G307450 Sobic007G188400 Sobic007G188400 Sobic007G147000--Sobic007G188400 Sobic001G511800 Sobic001G511800 Sobic007G147000--Sobic001G511800 Sobic005G156800 Sobic005G156800 Sobic007G147000--Sobic005G156800 Sobic002G380750 Sobic002G380750 Sobic007G147000--Sobic002G380750 Sobic007G107200 Sobic007G107200 Sobic007G147000--Sobic007G107200 Sobic005G163450--Sobic003G399166 Sobic005G163450--Sobic005G156800 Sobic005G163450--Sobic002G380750 Sobic005G163450--Sobic001G307450 Sobic007G120100 Sobic007G120100 Sobic005G163450--Sobic007G120100 Sobic001G452400 Sobic001G452400 Sobic005G163450--Sobic001G452400 Sobic003G303000 Sobic003G303000 Sobic005G163450--Sobic003G303000 Sobic003G063600 Sobic003G063600 Sobic005G163450--Sobic003G063600 Sobic003G291050 Sobic003G291050 Sobic005G163450--Sobic003G291050 Sobic003G399166--Sobic005G163450 Sobic003G399166--Sobic001G307450 Sobic003G399166--Sobic005G156800 Sobic003G399166--Sobic002G380750 Sobic003G399166--Sobic007G120100 Sobic003G399166--Sobic003G063600 Sobic003G399166--Sobic001G452400 Sobic003G399166--Sobic003G291050 Sobic003G399166--Sobic003G303000 Sobic001G543000 Sobic001G543000 Sobic002G168100--Sobic001G543000 Sobic010G062950 Sobic010G062950 Sobic002G168100--Sobic010G062950 Sobic002G231700 Sobic002G231700 Sobic002G168100--Sobic002G231700 Sobic006G201350 Sobic006G201350 Sobic002G168100--Sobic006G201350 Sobic009G235801 Sobic009G235801 Sobic002G168100--Sobic009G235801 Sobic007G031500 Sobic007G031500 Sobic002G168100--Sobic007G031500 Sobic010G212900 Sobic010G212900 Sobic002G168100--Sobic010G212900 Sobic002G168100--Sobic001G452400 Sobic007G100275 Sobic007G100275 Sobic002G168100--Sobic007G100275 Sobic001G307450--Sobic005G163450 Sobic001G307450--Sobic003G399166 Sobic001G307450--Sobic005G156800 Sobic001G307450--Sobic002G380750 Sobic001G307450--Sobic003G291050 Sobic004G338400 Sobic004G338400 Sobic001G307450--Sobic004G338400 Sobic001G307450--Sobic001G452400 Sobic001G307450--Sobic007G120100 Sobic010G021600 Sobic010G021600 Sobic001G307450--Sobic010G021600 Sobic007G188400--Sobic001G511800 Sobic004G041700 Sobic004G041700 Sobic007G188400--Sobic004G041700 Sobic006G097100 Sobic006G097100 Sobic007G188400--Sobic006G097100 Sobic008G176200 Sobic008G176200 Sobic007G188400--Sobic008G176200 Sobic005G054800 Sobic005G054800 Sobic007G188400--Sobic005G054800 Sobic001G320300 Sobic001G320300 Sobic007G188400--Sobic001G320300 Sobic001G215000 Sobic001G215000 Sobic007G188400--Sobic001G215000 Sobic005G010600 Sobic005G010600 Sobic007G188400--Sobic005G010600 Sobic006G137000 Sobic006G137000 Sobic007G188400--Sobic006G137000 Sobic001G511800--Sobic007G188400 Sobic001G511800--Sobic008G176200 Sobic001G511800--Sobic006G097100 Sobic001G511800--Sobic004G041700 Sobic001G511800--Sobic001G320300 Sobic001G511800--Sobic001G215000 Sobic001G511800--Sobic005G054800 Sobic001G511800--Sobic005G010600 Sobic001G511800--Sobic006G137000 Sobic005G156800--Sobic002G380750 Sobic005G156800--Sobic001G452400 Sobic005G156800--Sobic010G021600 Sobic001G493300 Sobic001G493300 Sobic005G156800--Sobic001G493300 Sobic001G272300 Sobic001G272300 Sobic005G156800--Sobic001G272300 Sobic002G380750--Sobic005G156800 Sobic002G380750--Sobic001G452400 Sobic002G380750--Sobic010G021600 Sobic002G380750--Sobic001G493300 Sobic002G380750--Sobic001G272300 Sobic007G107200--Sobic001G307450 Sobic007G107200--Sobic007G188400 Sobic007G107200--Sobic001G511800 Sobic007G107200--Sobic005G163450 Sobic007G107200--Sobic003G399166 Sobic008G072050 Sobic008G072050 Sobic007G107200--Sobic008G072050 Sobic002G270900 Sobic002G270900 Sobic007G107200--Sobic002G270900 Sobic007G107200--Sobic007G147000 Sobic007G107200--Sobic004G338400
Octagon: transcription factors


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