Gene annotation
Transcriptome id Sobic.007G135700.1
Synonym multiseeded / SbTCP16, msd1;TCP-like gene;SbTCP16;SbTCP16, BRC1, ATTCP18, Sb07g021140, TCP18
Functional annotation "Increasing Grain number per panicle, TCP (Teosinte branched/Cycloidea/PCF) transcription factor" (PubMedID : 29483511)
CYC/tb1-like (ClassII) Subclade 19 TCP (PubMedID : 21444336)
"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)." (PubMedID : 27917941)
"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)" (PubMedID : 28383054)
TCP family transcription factor, putative, expressed
UniProt C5YL71
Pfam PF03634
Panther DB PTHR31072 PTHR31072:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G18550 : TCP family transcription factor
RAP-DB (Rice) LOC_Os08g33530.1 : TCP family transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a031134 , Zm00025a005959 , Zm00025a046945 , Zm00025a013893
Brachypodium KQJ90193
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G129300 zinc finger, C3HC4 type domain containing protein, expressed -
2 Sobic.003G235900 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
3 Sobic.003G399166 - -
4 Sobic.005G163450 - -
5 Sobic.001G511800 expressed protein -
6 Sobic.007G147000 protein binding protein, putative, expressed K11975: E3 ubiquitin-protein ligase RNF144
7 Sobic.008G176200 - -
8 Sobic.004G276166 - -
9 Sobic.006G281300 - -
10 Sobic.007G202000 pumilio domain-containing protein PPD1, putative, expressed -
11 Sobic.007G115600 protein kinase family protein, putative, expressed -
12 Sobic.007G188400 expressed protein -
13 Sobic.009G030701 - -
14 Sobic.001G075950 - -
15 Sobic.001G205600 expressed protein -
16 Sobic.010G129900 expressed protein -
17 Sobic.003G303000 nucleobase-ascorbate transporter, putative, expressed K14611: SLC23A1, solute carrier family 23 (nucleobase transporter), member 1
18 Sobic.002G221000 PHD-finger domain containing protein, putative, expressed -
19 Sobic.001G074500 - -
20 Sobic.001G403900 ECAGL1 - ECA1 gametogenesis related family protein precursor, expressed -


Gene co-expression network
sample Sobic007G135700 Sobic007G135700 Sobic006G129300 Sobic006G129300 Sobic007G135700--Sobic006G129300 Sobic003G235900 Sobic003G235900 Sobic007G135700--Sobic003G235900 Sobic003G399166 Sobic003G399166 Sobic007G135700--Sobic003G399166 Sobic005G163450 Sobic005G163450 Sobic007G135700--Sobic005G163450 Sobic001G511800 Sobic001G511800 Sobic007G135700--Sobic001G511800 Sobic007G147000 Sobic007G147000 Sobic007G135700--Sobic007G147000 Sobic008G176200 Sobic008G176200 Sobic007G135700--Sobic008G176200 Sobic004G276166 Sobic004G276166 Sobic007G135700--Sobic004G276166 Sobic006G281300 Sobic006G281300 Sobic007G135700--Sobic006G281300 Sobic006G129300--Sobic004G276166 Sobic009G247601 Sobic009G247601 Sobic006G129300--Sobic009G247601 Sobic010G135450 Sobic010G135450 Sobic006G129300--Sobic010G135450 Sobic007G003300 Sobic007G003300 Sobic006G129300--Sobic007G003300 Sobic009G190100 Sobic009G190100 Sobic006G129300--Sobic009G190100 Sobic003G254400 Sobic003G254400 Sobic006G129300--Sobic003G254400 Sobic001G074500 Sobic001G074500 Sobic006G129300--Sobic001G074500 Sobic002G247700 Sobic002G247700 Sobic006G129300--Sobic002G247700 Sobic010G064050 Sobic010G064050 Sobic006G129300--Sobic010G064050 Sobic003G235900--Sobic006G129300 Sobic003G235900--Sobic007G135700 Sobic003G235900--Sobic001G511800 Sobic003G303000 Sobic003G303000 Sobic003G235900--Sobic003G303000 Sobic007G188400 Sobic007G188400 Sobic003G235900--Sobic007G188400 Sobic003G235900--Sobic008G176200 Sobic003G235900--Sobic005G163450 Sobic003G235900--Sobic003G399166 Sobic003G235900--Sobic007G147000 Sobic003G399166--Sobic005G163450 Sobic001G307450 Sobic001G307450 Sobic003G399166--Sobic001G307450 Sobic005G156800 Sobic005G156800 Sobic003G399166--Sobic005G156800 Sobic002G380750 Sobic002G380750 Sobic003G399166--Sobic002G380750 Sobic007G120100 Sobic007G120100 Sobic003G399166--Sobic007G120100 Sobic003G063600 Sobic003G063600 Sobic003G399166--Sobic003G063600 Sobic001G452400 Sobic001G452400 Sobic003G399166--Sobic001G452400 Sobic003G291050 Sobic003G291050 Sobic003G399166--Sobic003G291050 Sobic003G399166--Sobic003G303000 Sobic005G163450--Sobic003G399166 Sobic005G163450--Sobic005G156800 Sobic005G163450--Sobic002G380750 Sobic005G163450--Sobic001G307450 Sobic005G163450--Sobic007G120100 Sobic005G163450--Sobic001G452400 Sobic005G163450--Sobic003G303000 Sobic005G163450--Sobic003G063600 Sobic005G163450--Sobic003G291050 Sobic001G511800--Sobic007G188400 Sobic001G511800--Sobic008G176200 Sobic006G097100 Sobic006G097100 Sobic001G511800--Sobic006G097100 Sobic004G041700 Sobic004G041700 Sobic001G511800--Sobic004G041700 Sobic001G320300 Sobic001G320300 Sobic001G511800--Sobic001G320300 Sobic001G215000 Sobic001G215000 Sobic001G511800--Sobic001G215000 Sobic005G054800 Sobic005G054800 Sobic001G511800--Sobic005G054800 Sobic005G010600 Sobic005G010600 Sobic001G511800--Sobic005G010600 Sobic006G137000 Sobic006G137000 Sobic001G511800--Sobic006G137000 Sobic007G147000--Sobic005G163450 Sobic007G147000--Sobic003G399166 Sobic002G168100 Sobic002G168100 Sobic007G147000--Sobic002G168100 Sobic007G147000--Sobic001G307450 Sobic007G147000--Sobic007G188400 Sobic007G147000--Sobic001G511800 Sobic007G147000--Sobic005G156800 Sobic007G147000--Sobic002G380750 Sobic007G107200 Sobic007G107200 Sobic007G147000--Sobic007G107200 Sobic008G176200--Sobic001G511800 Sobic008G176200--Sobic001G320300 Sobic008G176200--Sobic001G215000 Sobic008G176200--Sobic006G097100 Sobic008G176200--Sobic007G188400 Sobic008G176200--Sobic004G041700 Sobic007G153100 Sobic007G153100 Sobic008G176200--Sobic007G153100 Sobic008G159601 Sobic008G159601 Sobic008G176200--Sobic008G159601 Sobic009G153900 Sobic009G153900 Sobic008G176200--Sobic009G153900 Sobic005G137800 Sobic005G137800 Sobic004G276166--Sobic005G137800 Sobic004G276166--Sobic007G003300 Sobic003G242300 Sobic003G242300 Sobic004G276166--Sobic003G242300 Sobic005G229232 Sobic005G229232 Sobic004G276166--Sobic005G229232 Sobic008G191800 Sobic008G191800 Sobic004G276166--Sobic008G191800 Sobic007G145300 Sobic007G145300 Sobic004G276166--Sobic007G145300 Sobic009G197350 Sobic009G197350 Sobic004G276166--Sobic009G197350 Sobic009G156700 Sobic009G156700 Sobic004G276166--Sobic009G156700 Sobic002G269800 Sobic002G269800 Sobic004G276166--Sobic002G269800 Sobic010G083100 Sobic010G083100 Sobic006G281300--Sobic010G083100 Sobic005G199500 Sobic005G199500 Sobic006G281300--Sobic005G199500 Sobic004G055400 Sobic004G055400 Sobic006G281300--Sobic004G055400 Sobic001G418300 Sobic001G418300 Sobic006G281300--Sobic001G418300 Sobic010G129900 Sobic010G129900 Sobic006G281300--Sobic010G129900 Sobic007G069750 Sobic007G069750 Sobic006G281300--Sobic007G069750 Sobic002G185000 Sobic002G185000 Sobic006G281300--Sobic002G185000 Sobic009G030701 Sobic009G030701 Sobic006G281300--Sobic009G030701 Sobic001G267950 Sobic001G267950 Sobic006G281300--Sobic001G267950
Octagon: transcription factors


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