Gene annotation
Transcriptome id Sobic.002G221000.1
Synonym MS1, Sb02g026200
Functional annotation PHD-finger domain containing protein, putative, expressed
UniProt C5X263
Pfam PF00628
Panther DB PTHR15856 PTHR15856:SF15
NCBI CDD KOG1844; PHD Zn-finger proteins
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G22260 : RING/FYVE/PHD zinc finger superfamily protein
RAP-DB (Rice) LOC_Os09g27620.1 : PHD-finger domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a047218
Brachypodium KQJ90468
Barley HORVU0Hr1G013080.1 , HORVU5Hr1G067420.2 , HORVU5Hr1G067420.3 , HORVU5Hr1G067420.1
Wheat TraesCS5D02G240500 , TraesCS5A02G233600 , TraesCS5B02G232100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G154500 expressed protein -
2 Sobic.004G272000 - -
3 Sobic.003G390000 cytochrome P450, putative, expressed -
4 Sobic.001G403900 ECAGL1 - ECA1 gametogenesis related family protein precursor, expressed -
5 Sobic.001G005100 lipid binding protein, putative, expressed -
6 Sobic.001G195866 - -
7 Sobic.008G176266 - -
8 Sobic.006G220100 - -
9 Sobic.008G026500 - -
10 Sobic.010G000401 - -
11 Sobic.002G365300 NBS-LRR type disease resistance protein, putative, expressed -
12 Sobic.001G477500 - -
13 Sobic.004G089801 - -
14 Sobic.003G091800 seven in absentia protein family protein, expressed -
15 Sobic.006G222200 MBTB7 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
16 Sobic.004G007166 - -
17 Sobic.002G033100 GDSL-like lipase/acylhydrolase, putative, expressed -
18 Sobic.001G221750 - -
19 Sobic.010G210400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@- -
20 Sobic.010G129900 expressed protein -


Gene co-expression network
sample Sobic002G221000 Sobic002G221000 Sobic008G154500 Sobic008G154500 Sobic002G221000--Sobic008G154500 Sobic004G272000 Sobic004G272000 Sobic002G221000--Sobic004G272000 Sobic003G390000 Sobic003G390000 Sobic002G221000--Sobic003G390000 Sobic001G403900 Sobic001G403900 Sobic002G221000--Sobic001G403900 Sobic001G005100 Sobic001G005100 Sobic002G221000--Sobic001G005100 Sobic001G195866 Sobic001G195866 Sobic002G221000--Sobic001G195866 Sobic008G176266 Sobic008G176266 Sobic002G221000--Sobic008G176266 Sobic006G220100 Sobic006G220100 Sobic002G221000--Sobic006G220100 Sobic008G026500 Sobic008G026500 Sobic002G221000--Sobic008G026500 Sobic008G154500--Sobic001G403900 Sobic008G154500--Sobic002G221000 Sobic006G107332 Sobic006G107332 Sobic008G154500--Sobic006G107332 Sobic008G154500--Sobic001G005100 Sobic008G154500--Sobic006G220100 Sobic002G185000 Sobic002G185000 Sobic008G154500--Sobic002G185000 Sobic010G129900 Sobic010G129900 Sobic008G154500--Sobic010G129900 Sobic008G154500--Sobic001G195866 Sobic004G055400 Sobic004G055400 Sobic008G154500--Sobic004G055400 Sobic004G272000--Sobic008G026500 Sobic004G089801 Sobic004G089801 Sobic004G272000--Sobic004G089801 Sobic001G084133 Sobic001G084133 Sobic004G272000--Sobic001G084133 Sobic005G230900 Sobic005G230900 Sobic004G272000--Sobic005G230900 Sobic002G365300 Sobic002G365300 Sobic004G272000--Sobic002G365300 Sobic004G272000--Sobic002G221000 Sobic004G007166 Sobic004G007166 Sobic004G272000--Sobic004G007166 Sobic004G272000--Sobic001G005100 Sobic004G272000--Sobic008G176266 Sobic003G390000--Sobic002G221000 Sobic001G070900 Sobic001G070900 Sobic003G390000--Sobic001G070900 Sobic003G390000--Sobic004G007166 Sobic003G390000--Sobic001G195866 Sobic001G477500 Sobic001G477500 Sobic003G390000--Sobic001G477500 Sobic003G390000--Sobic008G176266 Sobic001G529301 Sobic001G529301 Sobic003G390000--Sobic001G529301 Sobic002G070500 Sobic002G070500 Sobic003G390000--Sobic002G070500 Sobic003G390000--Sobic004G272000 Sobic001G403900--Sobic008G154500 Sobic001G403900--Sobic010G129900 Sobic001G403900--Sobic001G005100 Sobic001G403900--Sobic004G055400 Sobic007G069750 Sobic007G069750 Sobic001G403900--Sobic007G069750 Sobic002G162900 Sobic002G162900 Sobic001G403900--Sobic002G162900 Sobic006G223850 Sobic006G223850 Sobic001G403900--Sobic006G223850 Sobic005G199500 Sobic005G199500 Sobic001G403900--Sobic005G199500 Sobic001G403900--Sobic006G107332 Sobic003G278800 Sobic003G278800 Sobic001G005100--Sobic003G278800 Sobic002G033100 Sobic002G033100 Sobic001G005100--Sobic002G033100 Sobic001G005100--Sobic002G162900 Sobic001G005100--Sobic001G403900 Sobic006G222200 Sobic006G222200 Sobic001G005100--Sobic006G222200 Sobic010G000401 Sobic010G000401 Sobic001G005100--Sobic010G000401 Sobic001G221750 Sobic001G221750 Sobic001G005100--Sobic001G221750 Sobic001G005100--Sobic004G089801 Sobic001G005100--Sobic004G055400 Sobic009G218450 Sobic009G218450 Sobic001G195866--Sobic009G218450 Sobic010G135700 Sobic010G135700 Sobic001G195866--Sobic010G135700 Sobic001G221700 Sobic001G221700 Sobic001G195866--Sobic001G221700 Sobic003G348300 Sobic003G348300 Sobic001G195866--Sobic003G348300 Sobic001G195866--Sobic002G221000 Sobic002G262250 Sobic002G262250 Sobic001G195866--Sobic002G262250 Sobic001G195866--Sobic008G154500 Sobic003G217566 Sobic003G217566 Sobic001G195866--Sobic003G217566 Sobic001G486400 Sobic001G486400 Sobic001G195866--Sobic001G486400 Sobic008G176266--Sobic004G007166 Sobic008G176266--Sobic004G272000 Sobic008G176266--Sobic002G221000 Sobic008G187450 Sobic008G187450 Sobic008G176266--Sobic008G187450 Sobic003G340500 Sobic003G340500 Sobic008G176266--Sobic003G340500 Sobic008G176266--Sobic008G026500 Sobic001G387400 Sobic001G387400 Sobic008G176266--Sobic001G387400 Sobic008G176266--Sobic002G070500 Sobic007G203600 Sobic007G203600 Sobic008G176266--Sobic007G203600 Sobic006G220100--Sobic008G154500 Sobic006G220100--Sobic002G221000 Sobic006G220100--Sobic001G403900 Sobic006G220100--Sobic001G005100 Sobic006G220100--Sobic004G272000 Sobic006G220100--Sobic004G055400 Sobic006G220100--Sobic008G176266 Sobic006G220100--Sobic010G129900 Sobic006G220100--Sobic001G221750 Sobic008G026500--Sobic004G272000 Sobic001G523050 Sobic001G523050 Sobic008G026500--Sobic001G523050 Sobic008G026500--Sobic002G365300 Sobic008G026500--Sobic005G230900 Sobic008G026500--Sobic008G176266 Sobic008G026500--Sobic002G221000 Sobic008G026500--Sobic001G221700 Sobic008G026500--Sobic004G089801 Sobic008G026500--Sobic001G005100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.