Gene annotation
Transcriptome id Sobic.008G123400.1
Synonym Sb08g017580
Functional annotation HEAT repeat family protein, putative, expressed
UniProt C5YPK4
Pfam PF12717
Panther DB PTHR14222 PTHR14222:SF1
NCBI CDD -
KEGG Orthology K11491; condensin-2 complex subunit D3
Gene Ontology GO:0007076; mitotic chromosome condensation


Orthologs (automatic annotation)
TAIR AT4G15890 : binding
RAP-DB (Rice) LOC_Os12g36170.1 : HEAT repeat family protein, putative, expressed
MaizeGDB (Corn) Zm00025a054329
Brachypodium KQJ86412
Barley HORVU5Hr1G113260.8 , HORVU5Hr1G113260.9 , HORVU5Hr1G113260.4 , HORVU5Hr1G113260.5 , HORVU5Hr1G113260.6 , HORVU5Hr1G113260.7 , HORVU5Hr1G113260.1 , HORVU5Hr1G113260.2 , HORVU5Hr1G113260.3 , HORVU5Hr1G113260.10
Wheat TraesCS5B02G493100 , TraesCS5D02G493500 , TraesCS5B02G493100 , TraesCS5A02G480000 , TraesCS5A02G480000
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G385200 emp24/gp25L/p24 family protein, putative, expressed -
2 Sobic.004G205700 remorin C-terminal domain containing protein, putative, expressed -
3 Sobic.006G210600 expressed protein -
4 Sobic.006G155400 expressed protein -
5 Sobic.001G259200 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
6 Sobic.002G240300 expressed protein K19307: 25S rRNA (uracil2634-N3)-methyltransferase
7 Sobic.007G032200 - -
8 Sobic.002G132201 - -
9 Sobic.005G150250 - -
10 Sobic.003G149700 FAD dependent oxidoreductase domain containing protein, expressed K00306: sarcosine oxidase / L-pipecolate oxidase
11 Sobic.001G308900 zinc finger, C3HC4 type domain containing protein, expressed K15691: E3 ubiquitin-protein ligase RFWD3
12 Sobic.005G073300 limonoid UDP-glucosyltransferase, putative, expressed -
13 Sobic.002G054800 "O2(Ortholog in maize:Hartings et al., 1989)"(PubMedID : 31659852)@bZIP transcription factor domain containing protein, expressed -
14 Sobic.009G022600 - -
15 Sobic.001G534000 kinesin motor domain containing protein, putative, expressed K10406: kinesin family member C2/C3
16 Sobic.002G172300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.001G468900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@DUF623 domain containing protein, expressed -
18 Sobic.003G193900 - -
19 Sobic.001G371650 - -
20 Sobic.002G240200 expressed protein K19307: 25S rRNA (uracil2634-N3)-methyltransferase


Gene co-expression network
sample Sobic008G123400 Sobic008G123400 Sobic001G385200 Sobic001G385200 Sobic008G123400--Sobic001G385200 Sobic004G205700 Sobic004G205700 Sobic008G123400--Sobic004G205700 Sobic006G210600 Sobic006G210600 Sobic008G123400--Sobic006G210600 Sobic006G155400 Sobic006G155400 Sobic008G123400--Sobic006G155400 Sobic001G259200 Sobic001G259200 Sobic008G123400--Sobic001G259200 Sobic002G240300 Sobic002G240300 Sobic008G123400--Sobic002G240300 Sobic007G032200 Sobic007G032200 Sobic008G123400--Sobic007G032200 Sobic002G132201 Sobic002G132201 Sobic008G123400--Sobic002G132201 Sobic005G150250 Sobic005G150250 Sobic008G123400--Sobic005G150250 Sobic001G385200--Sobic008G123400 Sobic001G385200--Sobic006G155400 Sobic001G385200--Sobic005G150250 Sobic003G356500 Sobic003G356500 Sobic001G385200--Sobic003G356500 Sobic001G385200--Sobic002G240300 Sobic004G037401 Sobic004G037401 Sobic001G385200--Sobic004G037401 Sobic009G022600 Sobic009G022600 Sobic001G385200--Sobic009G022600 Sobic002G033100 Sobic002G033100 Sobic001G385200--Sobic002G033100 Sobic003G149700 Sobic003G149700 Sobic001G385200--Sobic003G149700 Sobic004G205700--Sobic008G123400 Sobic001G430200 Sobic001G430200 Sobic004G205700--Sobic001G430200 Sobic003G091800 Sobic003G091800 Sobic004G205700--Sobic003G091800 Sobic001G221750 Sobic001G221750 Sobic004G205700--Sobic001G221750 Sobic006G281300 Sobic006G281300 Sobic004G205700--Sobic006G281300 Sobic007G069750 Sobic007G069750 Sobic004G205700--Sobic007G069750 Sobic010G129900 Sobic010G129900 Sobic004G205700--Sobic010G129900 Sobic001G403900 Sobic001G403900 Sobic004G205700--Sobic001G403900 Sobic001G534000 Sobic001G534000 Sobic004G205700--Sobic001G534000 Sobic006G210600--Sobic002G240300 Sobic006G210600--Sobic006G155400 Sobic006G210600--Sobic005G150250 Sobic006G210600--Sobic002G132201 Sobic006G210600--Sobic009G022600 Sobic005G073300 Sobic005G073300 Sobic006G210600--Sobic005G073300 Sobic006G210600--Sobic003G149700 Sobic002G054800 Sobic002G054800 Sobic006G210600--Sobic002G054800 Sobic010G215201 Sobic010G215201 Sobic006G210600--Sobic010G215201 Sobic006G155400--Sobic005G150250 Sobic006G155400--Sobic003G149700 Sobic006G155400--Sobic009G022600 Sobic006G155400--Sobic002G132201 Sobic006G222200 Sobic006G222200 Sobic006G155400--Sobic006G222200 Sobic006G155400--Sobic003G356500 Sobic003G193900 Sobic003G193900 Sobic006G155400--Sobic003G193900 Sobic006G155400--Sobic006G210600 Sobic006G155400--Sobic005G073300 Sobic001G112300 Sobic001G112300 Sobic001G259200--Sobic001G112300 Sobic002G094700 Sobic002G094700 Sobic001G259200--Sobic002G094700 Sobic010G200300 Sobic010G200300 Sobic001G259200--Sobic010G200300 Sobic001G259200--Sobic007G069750 Sobic001G259200--Sobic001G221750 Sobic001G259200--Sobic006G155400 Sobic009G127201 Sobic009G127201 Sobic001G259200--Sobic009G127201 Sobic002G213050 Sobic002G213050 Sobic001G259200--Sobic002G213050 Sobic002G237400 Sobic002G237400 Sobic001G259200--Sobic002G237400 Sobic002G240300--Sobic006G210600 Sobic002G240300--Sobic006G155400 Sobic002G240300--Sobic005G150250 Sobic002G240300--Sobic006G222200 Sobic002G240300--Sobic001G221750 Sobic002G240300--Sobic003G149700 Sobic002G240300--Sobic002G033100 Sobic002G240300--Sobic003G356500 Sobic002G240300--Sobic001G112300 Sobic001G371650 Sobic001G371650 Sobic007G032200--Sobic001G371650 Sobic007G032200--Sobic002G132201 Sobic007G032200--Sobic002G054800 Sobic002G240200 Sobic002G240200 Sobic007G032200--Sobic002G240200 Sobic004G282200 Sobic004G282200 Sobic007G032200--Sobic004G282200 Sobic007G032200--Sobic005G073300 Sobic003G048900 Sobic003G048900 Sobic007G032200--Sobic003G048900 Sobic001G071500 Sobic001G071500 Sobic007G032200--Sobic001G071500 Sobic007G032200--Sobic009G022600 Sobic002G132201--Sobic002G054800 Sobic002G132201--Sobic005G073300 Sobic002G132201--Sobic003G149700 Sobic002G132201--Sobic001G071500 Sobic002G132201--Sobic002G240200 Sobic002G132201--Sobic009G022600 Sobic002G132201--Sobic010G215201 Sobic002G132201--Sobic001G371650 Sobic002G132201--Sobic006G155400 Sobic005G150250--Sobic006G155400 Sobic005G150250--Sobic003G149700 Sobic005G150250--Sobic006G222200 Sobic005G150250--Sobic002G132201 Sobic005G150250--Sobic003G356500 Sobic005G150250--Sobic009G022600 Sobic005G150250--Sobic003G193900 Sobic005G150250--Sobic005G073300 Sobic005G150250--Sobic006G210600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.