Gene annotation
Transcriptome id Sobic.001G308900.2,Sobic.001G308900.1
Synonym Sb01g030130
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A1Z5S8P1 , A0A1Z5S8F1
Pfam PF13639
Panther DB PTHR16047 PTHR16047:SF9
NCBI CDD KOG1645; RING-finger-containing E3 ubiquitin ligase
KEGG Orthology K15691; E3 ubiquitin-protein ligase RFWD3
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G03450 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os10g39850.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a052282
Brachypodium PNT67824
Barley -
Wheat TraesCS1B02G219500 , TraesCS1A02G206000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G308900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G030801 - -
2 Sobic.003G229900 - -
3 Sobic.006G049633 - -
4 Sobic.002G172300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.002G055000 bZIP transcription factor domain containing protein, expressed -
6 Sobic.002G266700 - -
7 Sobic.001G297900 aminotransferase, classes I and II, domain containing protein, expressed K00652: 8-amino-7-oxononanoate synthase
8 Sobic.010G011500 - -
9 Sobic.006G161200 cysteine-rich repeat secretory protein precursor, putative, expressed -
10 Sobic.001G480900 glyoxalase family protein, putative, expressed -
11 Sobic.001G421100 - -
12 Sobic.010G215201 - -
13 Sobic.002G240200 expressed protein K19307: 25S rRNA (uracil2634-N3)-methyltransferase
14 Sobic.001G242400 - -
15 Sobic.001G371650 - -
16 Sobic.001G071500 - -
17 Sobic.010G090850 - -
18 Sobic.004G296750 - -
19 Sobic.002G054800 "O2(Ortholog in maize:Hartings et al., 1989)"(PubMedID : 31659852)@bZIP transcription factor domain containing protein, expressed -
20 Sobic.007G007100 expressed protein -


Gene co-expression network
sample Sobic001G308900 Sobic001G308900 Sobic008G030801 Sobic008G030801 Sobic001G308900--Sobic008G030801 Sobic003G229900 Sobic003G229900 Sobic001G308900--Sobic003G229900 Sobic006G049633 Sobic006G049633 Sobic001G308900--Sobic006G049633 Sobic002G172300 Sobic002G172300 Sobic001G308900--Sobic002G172300 Sobic002G055000 Sobic002G055000 Sobic001G308900--Sobic002G055000 Sobic002G266700 Sobic002G266700 Sobic001G308900--Sobic002G266700 Sobic001G297900 Sobic001G297900 Sobic001G308900--Sobic001G297900 Sobic010G011500 Sobic010G011500 Sobic001G308900--Sobic010G011500 Sobic006G161200 Sobic006G161200 Sobic001G308900--Sobic006G161200 Sobic001G071500 Sobic001G071500 Sobic008G030801--Sobic001G071500 Sobic008G030801--Sobic010G011500 Sobic008G030801--Sobic001G297900 Sobic008G030801--Sobic002G055000 Sobic010G215201 Sobic010G215201 Sobic008G030801--Sobic010G215201 Sobic001G480900 Sobic001G480900 Sobic008G030801--Sobic001G480900 Sobic008G030801--Sobic003G229900 Sobic008G030801--Sobic006G049633 Sobic002G054800 Sobic002G054800 Sobic008G030801--Sobic002G054800 Sobic003G229900--Sobic006G049633 Sobic003G229900--Sobic002G055000 Sobic003G229900--Sobic010G011500 Sobic003G229900--Sobic001G480900 Sobic003G229900--Sobic002G266700 Sobic004G296750 Sobic004G296750 Sobic003G229900--Sobic004G296750 Sobic008G061900 Sobic008G061900 Sobic003G229900--Sobic008G061900 Sobic007G007100 Sobic007G007100 Sobic003G229900--Sobic007G007100 Sobic009G019400 Sobic009G019400 Sobic003G229900--Sobic009G019400 Sobic006G049633--Sobic003G229900 Sobic006G049633--Sobic002G055000 Sobic006G049633--Sobic004G296750 Sobic006G049633--Sobic001G480900 Sobic006G049633--Sobic002G266700 Sobic006G049633--Sobic010G011500 Sobic006G049633--Sobic008G061900 Sobic003G281000 Sobic003G281000 Sobic006G049633--Sobic003G281000 Sobic006G049633--Sobic007G007100 Sobic002G172300--Sobic002G054800 Sobic002G172300--Sobic001G071500 Sobic002G172300--Sobic008G030801 Sobic002G172300--Sobic010G215201 Sobic005G073300 Sobic005G073300 Sobic002G172300--Sobic005G073300 Sobic002G132201 Sobic002G132201 Sobic002G172300--Sobic002G132201 Sobic002G240200 Sobic002G240200 Sobic002G172300--Sobic002G240200 Sobic001G371650 Sobic001G371650 Sobic002G172300--Sobic001G371650 Sobic001G421100 Sobic001G421100 Sobic002G172300--Sobic001G421100 Sobic002G055000--Sobic001G480900 Sobic002G055000--Sobic010G011500 Sobic002G055000--Sobic004G296750 Sobic002G055000--Sobic006G049633 Sobic002G055000--Sobic003G281000 Sobic002G055000--Sobic001G297900 Sobic002G055000--Sobic002G266700 Sobic002G055000--Sobic003G229900 Sobic002G055000--Sobic008G030801 Sobic002G266700--Sobic001G480900 Sobic002G266700--Sobic002G055000 Sobic002G266700--Sobic004G296750 Sobic002G266700--Sobic006G049633 Sobic002G266700--Sobic010G011500 Sobic002G266700--Sobic003G281000 Sobic002G266700--Sobic003G229900 Sobic002G266700--Sobic001G297900 Sobic002G266700--Sobic008G061900 Sobic001G297900--Sobic002G055000 Sobic001G297900--Sobic010G011500 Sobic001G297900--Sobic001G480900 Sobic001G297900--Sobic008G030801 Sobic001G297900--Sobic006G049633 Sobic001G297900--Sobic004G296750 Sobic001G297900--Sobic002G266700 Sobic001G297900--Sobic003G229900 Sobic001G297900--Sobic003G281000 Sobic010G011500--Sobic002G055000 Sobic010G011500--Sobic001G480900 Sobic010G011500--Sobic004G296750 Sobic010G011500--Sobic003G281000 Sobic010G011500--Sobic006G049633 Sobic010G011500--Sobic002G266700 Sobic010G011500--Sobic001G297900 Sobic010G011500--Sobic003G229900 Sobic010G011500--Sobic008G030801 Sobic006G161200--Sobic008G030801 Sobic006G161200--Sobic003G229900 Sobic001G273950 Sobic001G273950 Sobic006G161200--Sobic001G273950 Sobic006G161200--Sobic006G049633 Sobic006G161200--Sobic002G055000 Sobic006G161200--Sobic010G011500 Sobic006G161200--Sobic008G061900 Sobic006G161200--Sobic010G215201 Sobic005G205100 Sobic005G205100 Sobic006G161200--Sobic005G205100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.