Gene annotation
Transcriptome id Sobic.001G385200.9,Sobic.001G385200.10,Sobic.001G385200.4,Sobic.001G385200.11,Sobic.001G385200.3,Sobic.001G385200.8,Sobic.001G385200.7,Sobic.001G385200.2,Sobic.001G385200.1
Synonym Sb01g036530
Functional annotation emp24/gp25L/p24 family protein, putative, expressed
UniProt A0A1Z5S9Q2 , A0A1B6QNH2 , A0A1Z5S9Q1 , A0A1B6QNH7 , A0A1B6QNF8 , C5X1P5
Pfam PF01105
Panther DB PTHR22811 PTHR22811:SF69
NCBI CDD KOG1691; emp24/gp25L/p24 family of membrane trafficking proteins
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0006810transport


Orthologs (automatic annotation)
TAIR AT1G14010 : emp24/gp25L/p24 family/GOLD family protein
RAP-DB (Rice) LOC_Os03g21110.1 : emp24/gp25L/p24 family protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G123400 HEAT repeat family protein, putative, expressed K11491: condensin-2 complex subunit D3
2 Sobic.006G155400 expressed protein -
3 Sobic.005G150250 - -
4 Sobic.003G356500 "uncharacterized lipid transporters, up-regulated under drought stress, mapped into a QTL involved in pre-flowering drought tolerance (QSTG2_4)"(PubMedID : 24655390)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@LTPL101 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
5 Sobic.002G240300 expressed protein K19307: 25S rRNA (uracil2634-N3)-methyltransferase
6 Sobic.004G037401 - -
7 Sobic.009G022600 - -
8 Sobic.002G033100 GDSL-like lipase/acylhydrolase, putative, expressed -
9 Sobic.003G149700 FAD dependent oxidoreductase domain containing protein, expressed K00306: sarcosine oxidase / L-pipecolate oxidase
10 Sobic.001G468900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@DUF623 domain containing protein, expressed -
11 Sobic.004G045000 phytosulfokine receptor precursor, putative, expressed -
12 Sobic.006G210600 expressed protein -
13 Sobic.003G059500 verticillium wilt disease resistance protein, putative, expressed -
14 Sobic.003G278800 lipase, putative, expressed -
15 Sobic.001G005100 lipid binding protein, putative, expressed -
16 Sobic.002G132201 - -
17 Sobic.001G259200 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
18 Sobic.006G222200 MBTB7 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
19 Sobic.001G112300 OsCam3 - Calmodulin, expressed K02183: calmodulin
20 Sobic.001G421450 - -


Gene co-expression network
sample Sobic001G385200 Sobic001G385200 Sobic008G123400 Sobic008G123400 Sobic001G385200--Sobic008G123400 Sobic006G155400 Sobic006G155400 Sobic001G385200--Sobic006G155400 Sobic005G150250 Sobic005G150250 Sobic001G385200--Sobic005G150250 Sobic003G356500 Sobic003G356500 Sobic001G385200--Sobic003G356500 Sobic002G240300 Sobic002G240300 Sobic001G385200--Sobic002G240300 Sobic004G037401 Sobic004G037401 Sobic001G385200--Sobic004G037401 Sobic009G022600 Sobic009G022600 Sobic001G385200--Sobic009G022600 Sobic002G033100 Sobic002G033100 Sobic001G385200--Sobic002G033100 Sobic003G149700 Sobic003G149700 Sobic001G385200--Sobic003G149700 Sobic008G123400--Sobic001G385200 Sobic004G205700 Sobic004G205700 Sobic008G123400--Sobic004G205700 Sobic006G210600 Sobic006G210600 Sobic008G123400--Sobic006G210600 Sobic008G123400--Sobic006G155400 Sobic001G259200 Sobic001G259200 Sobic008G123400--Sobic001G259200 Sobic008G123400--Sobic002G240300 Sobic007G032200 Sobic007G032200 Sobic008G123400--Sobic007G032200 Sobic002G132201 Sobic002G132201 Sobic008G123400--Sobic002G132201 Sobic008G123400--Sobic005G150250 Sobic006G155400--Sobic005G150250 Sobic006G155400--Sobic003G149700 Sobic006G155400--Sobic009G022600 Sobic006G155400--Sobic002G132201 Sobic006G222200 Sobic006G222200 Sobic006G155400--Sobic006G222200 Sobic006G155400--Sobic003G356500 Sobic003G193900 Sobic003G193900 Sobic006G155400--Sobic003G193900 Sobic006G155400--Sobic006G210600 Sobic005G073300 Sobic005G073300 Sobic006G155400--Sobic005G073300 Sobic005G150250--Sobic006G155400 Sobic005G150250--Sobic003G149700 Sobic005G150250--Sobic006G222200 Sobic005G150250--Sobic002G132201 Sobic005G150250--Sobic003G356500 Sobic005G150250--Sobic009G022600 Sobic005G150250--Sobic003G193900 Sobic005G150250--Sobic005G073300 Sobic005G150250--Sobic006G210600 Sobic003G356500--Sobic003G149700 Sobic003G356500--Sobic005G150250 Sobic003G356500--Sobic006G155400 Sobic003G356500--Sobic002G132201 Sobic003G356500--Sobic009G022600 Sobic001G468900 Sobic001G468900 Sobic003G356500--Sobic001G468900 Sobic003G356500--Sobic003G193900 Sobic003G059500 Sobic003G059500 Sobic003G356500--Sobic003G059500 Sobic004G089801 Sobic004G089801 Sobic003G356500--Sobic004G089801 Sobic002G240300--Sobic006G210600 Sobic002G240300--Sobic006G155400 Sobic002G240300--Sobic005G150250 Sobic002G240300--Sobic006G222200 Sobic001G221750 Sobic001G221750 Sobic002G240300--Sobic001G221750 Sobic002G240300--Sobic003G149700 Sobic002G240300--Sobic002G033100 Sobic002G240300--Sobic003G356500 Sobic001G112300 Sobic001G112300 Sobic002G240300--Sobic001G112300 Sobic004G037401--Sobic009G022600 Sobic004G037401--Sobic003G149700 Sobic004G037401--Sobic005G150250 Sobic004G037401--Sobic006G155400 Sobic004G037401--Sobic002G132201 Sobic004G037401--Sobic005G073300 Sobic002G054800 Sobic002G054800 Sobic004G037401--Sobic002G054800 Sobic004G207350 Sobic004G207350 Sobic004G037401--Sobic004G207350 Sobic004G037401--Sobic003G356500 Sobic009G022600--Sobic004G037401 Sobic009G022600--Sobic002G132201 Sobic009G022600--Sobic005G073300 Sobic009G022600--Sobic003G149700 Sobic009G022600--Sobic002G054800 Sobic009G022600--Sobic006G155400 Sobic009G022600--Sobic005G150250 Sobic001G071500 Sobic001G071500 Sobic009G022600--Sobic001G071500 Sobic002G240200 Sobic002G240200 Sobic009G022600--Sobic002G240200 Sobic002G033100--Sobic006G222200 Sobic001G005100 Sobic001G005100 Sobic002G033100--Sobic001G005100 Sobic002G033100--Sobic001G221750 Sobic002G033100--Sobic005G150250 Sobic002G237400 Sobic002G237400 Sobic002G033100--Sobic002G237400 Sobic002G033100--Sobic006G155400 Sobic003G278800 Sobic003G278800 Sobic002G033100--Sobic003G278800 Sobic001G084133 Sobic001G084133 Sobic002G033100--Sobic001G084133 Sobic002G033100--Sobic004G089801 Sobic003G149700--Sobic002G132201 Sobic003G149700--Sobic005G150250 Sobic003G149700--Sobic005G073300 Sobic003G149700--Sobic009G022600 Sobic003G149700--Sobic006G155400 Sobic003G149700--Sobic002G054800 Sobic003G149700--Sobic001G071500 Sobic003G149700--Sobic003G356500 Sobic003G149700--Sobic003G193900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.