Gene annotation
Transcriptome id Sobic.001G284200.1
Synonym Sb01g027930, SKL2
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
CS domain containing protein, putative, expressed
UniProt C5WQP1
Pfam PF04969 PF01202
Panther DB PTHR21087 PTHR21087:SF0
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G35500 : shikimate kinase like 2
RAP-DB (Rice) LOC_Os10g42700.1 : CS domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a003537
Brachypodium KQJ97943 , KQJ97944
Barley HORVU1Hr1G050970.1
Wheat TraesCS1A02G195500
Populus -


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cDNA sequences
Sobic.001G284200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G253800 - -
2 Sobic.006G114300 pentatricopeptide, putative, expressed -
3 Sobic.003G157500 oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed -
4 Sobic.001G484300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@YGGT family protein, putative, expressed K02221: YggT family protein
5 Sobic.005G020200 myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
6 Sobic.001G188600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Rf1, mitochondrial precursor, putative, expressed -
7 Sobic.005G200600 dirigent, putative, expressed -
8 Sobic.001G357200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
9 Sobic.001G120000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
10 Sobic.006G025700 - -
11 Sobic.009G059100 Cupin domain containing protein, expressed -
12 Sobic.010G012900 superoxide dismutase, chloroplast, putative, expressed K04564: superoxide dismutase, Fe-Mn family
13 Sobic.001G172300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@kinase, pfkB family, putative, expressed -
14 Sobic.001G017000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal protein S6, putative, expressed K02990: RP-S6, MRPS6, small subunit ribosomal protein S6
15 Sobic.002G020100 chalcone synthase, putative, expressed -
16 Sobic.004G109000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chalcone isomerase 3, putative, expressed -
17 Sobic.008G030000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@elongation factor P, putative, expressed K02356: elongation factor P
18 Sobic.001G383900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.007G211100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed K03216: trmL, tRNA (cytidine/uridine-2'-O-)-methyltransferase
20 Sobic.009G098100 T-complex protein, putative, expressed -


Gene co-expression network
sample Sobic001G284200 Sobic001G284200 Sobic004G253800 Sobic004G253800 Sobic001G284200--Sobic004G253800 Sobic006G114300 Sobic006G114300 Sobic001G284200--Sobic006G114300 Sobic003G157500 Sobic003G157500 Sobic001G284200--Sobic003G157500 Sobic001G484300 Sobic001G484300 Sobic001G284200--Sobic001G484300 Sobic005G020200 Sobic005G020200 Sobic001G284200--Sobic005G020200 Sobic001G188600 Sobic001G188600 Sobic001G284200--Sobic001G188600 Sobic005G200600 Sobic005G200600 Sobic001G284200--Sobic005G200600 Sobic001G357200 Sobic001G357200 Sobic001G284200--Sobic001G357200 Sobic001G120000 Sobic001G120000 Sobic001G284200--Sobic001G120000 Sobic004G253800--Sobic005G200600 Sobic004G253800--Sobic003G157500 Sobic004G253800--Sobic005G020200 Sobic004G253800--Sobic001G188600 Sobic006G025700 Sobic006G025700 Sobic004G253800--Sobic006G025700 Sobic009G059100 Sobic009G059100 Sobic004G253800--Sobic009G059100 Sobic009G001500 Sobic009G001500 Sobic004G253800--Sobic009G001500 Sobic004G253800--Sobic001G357200 Sobic004G253800--Sobic006G114300 Sobic006G114300--Sobic001G188600 Sobic006G114300--Sobic001G357200 Sobic004G109000 Sobic004G109000 Sobic006G114300--Sobic004G109000 Sobic001G069500 Sobic001G069500 Sobic006G114300--Sobic001G069500 Sobic010G012900 Sobic010G012900 Sobic006G114300--Sobic010G012900 Sobic003G383500 Sobic003G383500 Sobic006G114300--Sobic003G383500 Sobic006G114300--Sobic004G253800 Sobic007G211100 Sobic007G211100 Sobic006G114300--Sobic007G211100 Sobic007G013400 Sobic007G013400 Sobic006G114300--Sobic007G013400 Sobic003G157500--Sobic006G025700 Sobic003G157500--Sobic009G059100 Sobic003G157500--Sobic005G020200 Sobic003G157500--Sobic004G253800 Sobic002G020100 Sobic002G020100 Sobic003G157500--Sobic002G020100 Sobic005G056201 Sobic005G056201 Sobic003G157500--Sobic005G056201 Sobic001G003600 Sobic001G003600 Sobic003G157500--Sobic001G003600 Sobic003G157500--Sobic005G200600 Sobic003G157500--Sobic004G109000 Sobic010G233800 Sobic010G233800 Sobic001G484300--Sobic010G233800 Sobic001G017000 Sobic001G017000 Sobic001G484300--Sobic001G017000 Sobic001G076500 Sobic001G076500 Sobic001G484300--Sobic001G076500 Sobic001G453300 Sobic001G453300 Sobic001G484300--Sobic001G453300 Sobic003G246400 Sobic003G246400 Sobic001G484300--Sobic003G246400 Sobic001G027600 Sobic001G027600 Sobic001G484300--Sobic001G027600 Sobic004G317900 Sobic004G317900 Sobic001G484300--Sobic004G317900 Sobic001G427000 Sobic001G427000 Sobic001G484300--Sobic001G427000 Sobic007G185100 Sobic007G185100 Sobic001G484300--Sobic007G185100 Sobic005G020200--Sobic003G157500 Sobic005G020200--Sobic009G059100 Sobic005G020200--Sobic005G200600 Sobic005G020200--Sobic004G253800 Sobic006G001400 Sobic006G001400 Sobic005G020200--Sobic006G001400 Sobic005G020200--Sobic005G056201 Sobic005G141000 Sobic005G141000 Sobic005G020200--Sobic005G141000 Sobic005G020200--Sobic006G025700 Sobic008G130700 Sobic008G130700 Sobic005G020200--Sobic008G130700 Sobic001G188600--Sobic001G069500 Sobic001G188600--Sobic006G114300 Sobic001G188600--Sobic001G357200 Sobic009G098100 Sobic009G098100 Sobic001G188600--Sobic009G098100 Sobic001G188600--Sobic010G012900 Sobic001G188600--Sobic004G109000 Sobic001G188600--Sobic007G211100 Sobic001G188600--Sobic004G253800 Sobic008G030000 Sobic008G030000 Sobic001G188600--Sobic008G030000 Sobic006G238100 Sobic006G238100 Sobic005G200600--Sobic006G238100 Sobic002G141100 Sobic002G141100 Sobic005G200600--Sobic002G141100 Sobic004G060700 Sobic004G060700 Sobic005G200600--Sobic004G060700 Sobic002G416950 Sobic002G416950 Sobic005G200600--Sobic002G416950 Sobic005G200600--Sobic009G059100 Sobic004G249400 Sobic004G249400 Sobic005G200600--Sobic004G249400 Sobic007G009600 Sobic007G009600 Sobic005G200600--Sobic007G009600 Sobic001G541300 Sobic001G541300 Sobic005G200600--Sobic001G541300 Sobic001G379300 Sobic001G379300 Sobic005G200600--Sobic001G379300 Sobic001G357200--Sobic001G188600 Sobic001G357200--Sobic006G114300 Sobic001G357200--Sobic010G012900 Sobic001G357200--Sobic009G001500 Sobic001G357200--Sobic008G030000 Sobic007G034500 Sobic007G034500 Sobic001G357200--Sobic007G034500 Sobic008G123600 Sobic008G123600 Sobic001G357200--Sobic008G123600 Sobic001G357200--Sobic001G069500 Sobic001G357200--Sobic003G383500 Sobic004G044000 Sobic004G044000 Sobic001G120000--Sobic004G044000 Sobic004G191200 Sobic004G191200 Sobic001G120000--Sobic004G191200 Sobic002G190800 Sobic002G190800 Sobic001G120000--Sobic002G190800 Sobic006G263800 Sobic006G263800 Sobic001G120000--Sobic006G263800 Sobic002G190100 Sobic002G190100 Sobic001G120000--Sobic002G190100 Sobic004G017200 Sobic004G017200 Sobic001G120000--Sobic004G017200 Sobic002G305700 Sobic002G305700 Sobic001G120000--Sobic002G305700 Sobic001G120000--Sobic001G027600 Sobic001G255400 Sobic001G255400 Sobic001G120000--Sobic001G255400
Octagon: transcription factors


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