Gene annotation
Transcriptome id Sobic.001G026400.1
Synonym Sb01g002520
Functional annotation expressed protein
UniProt C5WU17
Pfam PF05253 PF11722 PF05206
Panther DB PTHR12998 PTHR12998:SF0
NCBI CDD KOG2811; Uncharacterized conserved protein
KEGG Orthology K15446; TRM13, tRNA:m4X modification enzyme
Gene Ontology GO:0008168; methyltransferase activity GO:0008033tRNA processing


Orthologs (automatic annotation)
TAIR AT4G01880 : methyltransferases
RAP-DB (Rice) LOC_Os03g61750.1 : expressed protein
MaizeGDB (Corn) Zm00025a016388
Brachypodium KQK12298
Barley HORVU5Hr1G116970.30 , HORVU5Hr1G116970.7 , HORVU5Hr1G116970.6 , HORVU5Hr1G116970.5 , HORVU5Hr1G116970.4 , HORVU5Hr1G116970.3 , HORVU5Hr1G116970.2 , HORVU5Hr1G116970.9 , HORVU5Hr1G116970.8 , HORVU5Hr1G116970.19 , HORVU5Hr1G116970.18 , HORVU5Hr1G116970.17 , HORVU5Hr1G116970.16 , HORVU5Hr1G116970.15 , HORVU5Hr1G116970.14 , HORVU5Hr1G116970.13 , HORVU5Hr1G116970.12 , HORVU5Hr1G116970.11 , HORVU5Hr1G116970.10 , HORVU5Hr1G116970.26 , HORVU5Hr1G116970.27 , HORVU5Hr1G116970.24 , HORVU5Hr1G116970.22 , HORVU5Hr1G116970.23 , HORVU5Hr1G116970.20 , HORVU5Hr1G116970.21 , HORVU5Hr1G116970.28 , HORVU5Hr1G116970.29
Wheat TraesCS5B02G512400 , TraesCS5B02G512400 , TraesCS5B02G512400 , TraesCS5D02G512600 , TraesCS5D02G512600
Populus -


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cDNA sequences
Sobic.001G026400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G100500 RNA polymerase subunit, putative, expressed K03020: RPC19, DNA-directed RNA polymerases I and III subunit RPAC2
2 Sobic.003G398500 Uncharacterized ACR, COG1565 containing protein, putative, expressed -
3 Sobic.004G208800 expressed protein -
4 Sobic.001G102200 expressed protein -
5 Sobic.010G224100 expressed protein -
6 Sobic.006G094800 - -
7 Sobic.002G198900 PPR repeat domain containing protein, putative, expressed -
8 Sobic.006G108500 dynein light chain type 1 domain containing protein, expressed -
9 Sobic.004G053100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
10 Sobic.009G218700 pentatricopeptide, putative, expressed -
11 Sobic.004G203800 steroid nuclear receptor, ligand-binding, putative, expressed -
12 Sobic.001G411500 expressed protein -
13 Sobic.002G325200 harpin-induced protein 1 domain containing protein, expressed -
14 Sobic.007G130500 cation efflux family protein, putative, expressed K14692: SLC30A5_7, ZNT5_7, MTP, solute carrier family 30 (zinc transporter), member 5/7
15 Sobic.002G153600 expressed protein -
16 Sobic.002G412300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
17 Sobic.009G182500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.005G005300 expressed protein -
19 Sobic.006G206600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tyrosine phosphatase, putative, expressed -
20 Sobic.003G327300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic001G026400 Sobic001G026400 Sobic005G100500 Sobic005G100500 Sobic001G026400--Sobic005G100500 Sobic003G398500 Sobic003G398500 Sobic001G026400--Sobic003G398500 Sobic004G208800 Sobic004G208800 Sobic001G026400--Sobic004G208800 Sobic001G102200 Sobic001G102200 Sobic001G026400--Sobic001G102200 Sobic010G224100 Sobic010G224100 Sobic001G026400--Sobic010G224100 Sobic006G094800 Sobic006G094800 Sobic001G026400--Sobic006G094800 Sobic002G198900 Sobic002G198900 Sobic001G026400--Sobic002G198900 Sobic006G108500 Sobic006G108500 Sobic001G026400--Sobic006G108500 Sobic004G053100 Sobic004G053100 Sobic001G026400--Sobic004G053100 Sobic005G100500--Sobic006G108500 Sobic003G409500 Sobic003G409500 Sobic005G100500--Sobic003G409500 Sobic007G107800 Sobic007G107800 Sobic005G100500--Sobic007G107800 Sobic010G267300 Sobic010G267300 Sobic005G100500--Sobic010G267300 Sobic001G395600 Sobic001G395600 Sobic005G100500--Sobic001G395600 Sobic009G218700 Sobic009G218700 Sobic005G100500--Sobic009G218700 Sobic004G015600 Sobic004G015600 Sobic005G100500--Sobic004G015600 Sobic007G113566 Sobic007G113566 Sobic005G100500--Sobic007G113566 Sobic004G157050 Sobic004G157050 Sobic005G100500--Sobic004G157050 Sobic001G411500 Sobic001G411500 Sobic003G398500--Sobic001G411500 Sobic003G398500--Sobic004G208800 Sobic010G249900 Sobic010G249900 Sobic003G398500--Sobic010G249900 Sobic003G398500--Sobic007G107800 Sobic003G398500--Sobic005G100500 Sobic001G444200 Sobic001G444200 Sobic003G398500--Sobic001G444200 Sobic008G014400 Sobic008G014400 Sobic003G398500--Sobic008G014400 Sobic004G312000 Sobic004G312000 Sobic003G398500--Sobic004G312000 Sobic003G398500--Sobic004G053100 Sobic004G208800--Sobic001G444200 Sobic004G208800--Sobic008G014400 Sobic005G070901 Sobic005G070901 Sobic004G208800--Sobic005G070901 Sobic003G032301 Sobic003G032301 Sobic004G208800--Sobic003G032301 Sobic004G208800--Sobic001G395600 Sobic001G141200 Sobic001G141200 Sobic004G208800--Sobic001G141200 Sobic006G206600 Sobic006G206600 Sobic004G208800--Sobic006G206600 Sobic002G375200 Sobic002G375200 Sobic004G208800--Sobic002G375200 Sobic004G208800--Sobic007G107800 Sobic007G130500 Sobic007G130500 Sobic001G102200--Sobic007G130500 Sobic006G004200 Sobic006G004200 Sobic001G102200--Sobic006G004200 Sobic001G102200--Sobic001G411500 Sobic010G026850 Sobic010G026850 Sobic001G102200--Sobic010G026850 Sobic005G028500 Sobic005G028500 Sobic001G102200--Sobic005G028500 Sobic001G102200--Sobic006G206600 Sobic003G271100 Sobic003G271100 Sobic001G102200--Sobic003G271100 Sobic001G102200--Sobic005G100500 Sobic002G191900 Sobic002G191900 Sobic001G102200--Sobic002G191900 Sobic010G224100--Sobic006G108500 Sobic003G226600 Sobic003G226600 Sobic010G224100--Sobic003G226600 Sobic001G450900 Sobic001G450900 Sobic010G224100--Sobic001G450900 Sobic010G224100--Sobic006G094800 Sobic001G462300 Sobic001G462300 Sobic010G224100--Sobic001G462300 Sobic004G353650 Sobic004G353650 Sobic010G224100--Sobic004G353650 Sobic010G224100--Sobic007G107800 Sobic004G191901 Sobic004G191901 Sobic010G224100--Sobic004G191901 Sobic005G021400 Sobic005G021400 Sobic010G224100--Sobic005G021400 Sobic006G094800--Sobic006G206600 Sobic001G207301 Sobic001G207301 Sobic006G094800--Sobic001G207301 Sobic006G094800--Sobic009G218700 Sobic003G314200 Sobic003G314200 Sobic006G094800--Sobic003G314200 Sobic006G094800--Sobic003G226600 Sobic006G094800--Sobic001G450900 Sobic006G100150 Sobic006G100150 Sobic006G094800--Sobic006G100150 Sobic010G186900 Sobic010G186900 Sobic006G094800--Sobic010G186900 Sobic001G148000 Sobic001G148000 Sobic006G094800--Sobic001G148000 Sobic002G198900--Sobic009G218700 Sobic003G143600 Sobic003G143600 Sobic002G198900--Sobic003G143600 Sobic002G412300 Sobic002G412300 Sobic002G198900--Sobic002G412300 Sobic004G199100 Sobic004G199100 Sobic002G198900--Sobic004G199100 Sobic007G028300 Sobic007G028300 Sobic002G198900--Sobic007G028300 Sobic002G198900--Sobic006G206600 Sobic005G166200 Sobic005G166200 Sobic002G198900--Sobic005G166200 Sobic002G088300 Sobic002G088300 Sobic002G198900--Sobic002G088300 Sobic001G397550 Sobic001G397550 Sobic002G198900--Sobic001G397550 Sobic006G108500--Sobic005G021400 Sobic006G108500--Sobic010G267300 Sobic006G108500--Sobic005G100500 Sobic006G108500--Sobic001G395600 Sobic006G108500--Sobic001G450900 Sobic001G454700 Sobic001G454700 Sobic006G108500--Sobic001G454700 Sobic006G108500--Sobic001G462300 Sobic006G108500--Sobic004G157050 Sobic003G055400 Sobic003G055400 Sobic006G108500--Sobic003G055400 Sobic004G053100--Sobic005G100500 Sobic003G107000 Sobic003G107000 Sobic004G053100--Sobic003G107000 Sobic002G403700 Sobic002G403700 Sobic004G053100--Sobic002G403700 Sobic001G365266 Sobic001G365266 Sobic004G053100--Sobic001G365266 Sobic002G306500 Sobic002G306500 Sobic004G053100--Sobic002G306500 Sobic001G221601 Sobic001G221601 Sobic004G053100--Sobic001G221601 Sobic004G053100--Sobic003G409500 Sobic009G166650 Sobic009G166650 Sobic004G053100--Sobic009G166650 Sobic004G053100--Sobic004G312000
Octagon: transcription factors


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