Gene annotation
Transcriptome id Sobic.006G111800.1,Sobic.006G111800.3
Synonym Sb06g019380
Functional annotation expressed protein
UniProt C5YA85
Pfam PF12333
Panther DB PTHR16056 PTHR16056:SF2
NCBI CDD KOG2149; Uncharacterized conserved protein
KEGG Orthology K14827; IPI1, pre-rRNA-processing protein IPI1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G06350 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os04g39220.1 : expressed protein
MaizeGDB (Corn) Zm00025a011073
Brachypodium KQJ83049 , KQJ83048 , KQJ83050 , KQJ83051 , PNT61250
Barley HORVU2Hr1G081360.2 , HORVU2Hr1G081360.3 , HORVU2Hr1G081360.10 , HORVU2Hr1G081360.8 , HORVU2Hr1G081360.9 , HORVU2Hr1G081360.1 , HORVU2Hr1G081360.6 , HORVU2Hr1G081360.7 , HORVU2Hr1G081360.4 , HORVU2Hr1G081360.5
Wheat TraesCS2B02G347900 , TraesCS2B02G347900 , TraesCS2D02G329000 , TraesCS2A02G334700 , TraesCS2A02G334700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G356000 expressed protein K19022: AP-5 complex subunit beta-1
2 Sobic.010G249900 pentatricopeptide, putative, expressed -
3 Sobic.009G118200 MSP domain containing protein, putative, expressed -
4 Sobic.006G138600 DIE2/ALG10 family, putative, expressed K03850: alpha-1,2-glucosyltransferase
5 Sobic.001G408500 alpha-taxilin, putative, expressed -
6 Sobic.007G016400 expressed protein -
7 Sobic.003G398500 Uncharacterized ACR, COG1565 containing protein, putative, expressed -
8 Sobic.004G246000 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14780: DHX37, ATP-dependent RNA helicase DHX37/DHR1
9 Sobic.009G038600 GA20663-PA, putative, expressed -
10 Sobic.001G095800 XRCC4, putative, expressed K10886: DNA-repair protein XRCC4
11 Sobic.004G208301 - K15429: TRM5, tRNA (guanine37-N1)-methyltransferase
12 Sobic.001G098100 cyclin, putative, expressed K06634: cyclin H
13 Sobic.003G030500 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
14 Sobic.001G411500 expressed protein -
15 Sobic.010G066200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@multidrug resistance-associated protein 11, putative, expressed K05674: ATP-binding cassette, subfamily C (CFTR/MRP), member 10
16 Sobic.004G053100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
17 Sobic.003G107000 receptor-like protein kinase precursor, putative, expressed -
18 Sobic.009G227700 proteasome-related, putative, expressed K06692: 26S proteasome non-ATPase regulatory subunit 5
19 Sobic.005G027680 - -
20 Sobic.001G038800 SCAR-like protein 1, putative, expressed -


Gene co-expression network
sample Sobic006G111800 Sobic006G111800 Sobic004G356000 Sobic004G356000 Sobic006G111800--Sobic004G356000 Sobic010G249900 Sobic010G249900 Sobic006G111800--Sobic010G249900 Sobic009G118200 Sobic009G118200 Sobic006G111800--Sobic009G118200 Sobic006G138600 Sobic006G138600 Sobic006G111800--Sobic006G138600 Sobic001G408500 Sobic001G408500 Sobic006G111800--Sobic001G408500 Sobic007G016400 Sobic007G016400 Sobic006G111800--Sobic007G016400 Sobic003G398500 Sobic003G398500 Sobic006G111800--Sobic003G398500 Sobic004G246000 Sobic004G246000 Sobic006G111800--Sobic004G246000 Sobic009G038600 Sobic009G038600 Sobic006G111800--Sobic009G038600 Sobic004G356000--Sobic006G111800 Sobic004G010200 Sobic004G010200 Sobic004G356000--Sobic004G010200 Sobic005G020000 Sobic005G020000 Sobic004G356000--Sobic005G020000 Sobic003G334200 Sobic003G334200 Sobic004G356000--Sobic003G334200 Sobic009G184600 Sobic009G184600 Sobic004G356000--Sobic009G184600 Sobic007G056200 Sobic007G056200 Sobic004G356000--Sobic007G056200 Sobic001G283300 Sobic001G283300 Sobic004G356000--Sobic001G283300 Sobic006G178100 Sobic006G178100 Sobic004G356000--Sobic006G178100 Sobic002G372500 Sobic002G372500 Sobic004G356000--Sobic002G372500 Sobic004G054600 Sobic004G054600 Sobic010G249900--Sobic004G054600 Sobic010G249900--Sobic007G016400 Sobic001G332933 Sobic001G332933 Sobic010G249900--Sobic001G332933 Sobic006G102200 Sobic006G102200 Sobic010G249900--Sobic006G102200 Sobic010G249900--Sobic003G398500 Sobic001G520600 Sobic001G520600 Sobic010G249900--Sobic001G520600 Sobic004G208800 Sobic004G208800 Sobic010G249900--Sobic004G208800 Sobic006G143800 Sobic006G143800 Sobic010G249900--Sobic006G143800 Sobic007G107800 Sobic007G107800 Sobic010G249900--Sobic007G107800 Sobic007G207100 Sobic007G207100 Sobic009G118200--Sobic007G207100 Sobic009G118200--Sobic006G102200 Sobic003G117850 Sobic003G117850 Sobic009G118200--Sobic003G117850 Sobic004G116900 Sobic004G116900 Sobic009G118200--Sobic004G116900 Sobic003G053100 Sobic003G053100 Sobic009G118200--Sobic003G053100 Sobic007G199901 Sobic007G199901 Sobic009G118200--Sobic007G199901 Sobic001G134150 Sobic001G134150 Sobic009G118200--Sobic001G134150 Sobic003G172600 Sobic003G172600 Sobic009G118200--Sobic003G172600 Sobic002G150200 Sobic002G150200 Sobic009G118200--Sobic002G150200 Sobic001G098100 Sobic001G098100 Sobic006G138600--Sobic001G098100 Sobic010G125700 Sobic010G125700 Sobic006G138600--Sobic010G125700 Sobic005G008500 Sobic005G008500 Sobic006G138600--Sobic005G008500 Sobic006G027200 Sobic006G027200 Sobic006G138600--Sobic006G027200 Sobic006G138600--Sobic009G038600 Sobic006G138600--Sobic001G408500 Sobic010G051200 Sobic010G051200 Sobic006G138600--Sobic010G051200 Sobic006G223200 Sobic006G223200 Sobic006G138600--Sobic006G223200 Sobic007G118400 Sobic007G118400 Sobic006G138600--Sobic007G118400 Sobic002G139700 Sobic002G139700 Sobic001G408500--Sobic002G139700 Sobic001G038800 Sobic001G038800 Sobic001G408500--Sobic001G038800 Sobic007G005200 Sobic007G005200 Sobic001G408500--Sobic007G005200 Sobic004G112800 Sobic004G112800 Sobic001G408500--Sobic004G112800 Sobic004G208301 Sobic004G208301 Sobic001G408500--Sobic004G208301 Sobic005G068300 Sobic005G068300 Sobic001G408500--Sobic005G068300 Sobic003G124000 Sobic003G124000 Sobic001G408500--Sobic003G124000 Sobic009G051500 Sobic009G051500 Sobic001G408500--Sobic009G051500 Sobic001G095800 Sobic001G095800 Sobic001G408500--Sobic001G095800 Sobic007G016400--Sobic010G249900 Sobic007G016400--Sobic006G102200 Sobic006G244200 Sobic006G244200 Sobic007G016400--Sobic006G244200 Sobic004G145550 Sobic004G145550 Sobic007G016400--Sobic004G145550 Sobic006G183500 Sobic006G183500 Sobic007G016400--Sobic006G183500 Sobic002G375200 Sobic002G375200 Sobic007G016400--Sobic002G375200 Sobic003G047400 Sobic003G047400 Sobic007G016400--Sobic003G047400 Sobic010G093200 Sobic010G093200 Sobic007G016400--Sobic010G093200 Sobic005G106700 Sobic005G106700 Sobic007G016400--Sobic005G106700 Sobic001G411500 Sobic001G411500 Sobic003G398500--Sobic001G411500 Sobic003G398500--Sobic004G208800 Sobic003G398500--Sobic010G249900 Sobic003G398500--Sobic007G107800 Sobic005G100500 Sobic005G100500 Sobic003G398500--Sobic005G100500 Sobic001G444200 Sobic001G444200 Sobic003G398500--Sobic001G444200 Sobic008G014400 Sobic008G014400 Sobic003G398500--Sobic008G014400 Sobic004G312000 Sobic004G312000 Sobic003G398500--Sobic004G312000 Sobic004G053100 Sobic004G053100 Sobic003G398500--Sobic004G053100 Sobic004G215650 Sobic004G215650 Sobic004G246000--Sobic004G215650 Sobic007G163200 Sobic007G163200 Sobic004G246000--Sobic007G163200 Sobic001G504300 Sobic001G504300 Sobic004G246000--Sobic001G504300 Sobic003G414200 Sobic003G414200 Sobic004G246000--Sobic003G414200 Sobic004G194600 Sobic004G194600 Sobic004G246000--Sobic004G194600 Sobic010G123650 Sobic010G123650 Sobic004G246000--Sobic010G123650 Sobic003G123950 Sobic003G123950 Sobic004G246000--Sobic003G123950 Sobic003G168700 Sobic003G168700 Sobic004G246000--Sobic003G168700 Sobic002G118000 Sobic002G118000 Sobic004G246000--Sobic002G118000 Sobic009G038600--Sobic006G223200 Sobic009G038600--Sobic006G138600 Sobic002G430400 Sobic002G430400 Sobic009G038600--Sobic002G430400 Sobic009G037000 Sobic009G037000 Sobic009G038600--Sobic009G037000 Sobic010G038600 Sobic010G038600 Sobic009G038600--Sobic010G038600 Sobic003G077600 Sobic003G077600 Sobic009G038600--Sobic003G077600 Sobic009G038600--Sobic005G008500 Sobic009G184800 Sobic009G184800 Sobic009G038600--Sobic009G184800 Sobic008G040000 Sobic008G040000 Sobic009G038600--Sobic008G040000
Octagon: transcription factors


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