Gene annotation
Transcriptome id Sobic.003G030500.1
Synonym Sb03g002860
Functional annotation -
UniProt A0A1B6Q114
Pfam PF04851 PF00271
Panther DB PTHR24031 PTHR24031:SF219
NCBI CDD -
KEGG Orthology K12823; DDX5, ATP-dependent RNA helicase DDX5/DBP2
Gene Ontology GO:0016787; hydrolase activity GO:0005524ATP binding GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G55150 : DEA(D/H)-box RNA helicase family protein
RAP-DB (Rice) LOC_Os01g10050.1 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a023002
Brachypodium KQK03167 , KQK03166 , KQK03169 , PNT70117 , PNT70116 , KQK03168
Barley HORVU3Hr1G018850.7 , HORVU3Hr1G018850.6 , HORVU3Hr1G018850.3 , HORVU3Hr1G018850.8 , HORVU3Hr1G018850.5 , HORVU3Hr1G018850.4 , HORVU3Hr1G018850.2 , HORVU3Hr1G018850.1
Wheat TraesCS3A02G103700 , TraesCS3D02G106000 , TraesCS3B02G121100
Populus -


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cDNA sequences
Sobic.003G030500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G102600 - -
2 Sobic.006G095100 ORG4, putative, expressed -
3 Sobic.003G124000 DNA methyltransferase protein, putative, expressed -
4 Sobic.001G092250 - -
5 Sobic.005G086250 - -
6 Sobic.004G246000 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14780: DHX37, ATP-dependent RNA helicase DHX37/DHR1
7 Sobic.005G194400 ribulose bisphosphate carboxylase large chain precursor, putative, expressed K01601: ribulose-bisphosphate carboxylase large chain
8 Sobic.007G134300 - -
9 Sobic.002G224800 gibberellin receptor GID1L2, putative, expressed -
10 Sobic.007G130500 cation efflux family protein, putative, expressed K14692: SLC30A5_7, ZNT5_7, MTP, solute carrier family 30 (zinc transporter), member 5/7
11 Sobic.005G173100 - -
12 Sobic.003G172800 ribulose bisphosphate carboxylase large chain precursor, putative, expressed K01601: ribulose-bisphosphate carboxylase large chain
13 Sobic.008G093300 - -
14 Sobic.009G210800 expressed protein -
15 Sobic.007G200700 pyridoxamine 5\'-phosphate oxidase family protein, putative, expressed -
16 Sobic.006G029850 - -
17 Sobic.004G130500 GDSL-like lipase/acylhydrolase, putative, expressed -
18 Sobic.006G049200 violaxanthin de-epoxidase, putative, expressed K09839: VDE, violaxanthin de-epoxidase
19 Sobic.003G368200 expressed protein -
20 Sobic.K032400 - -


Gene co-expression network
sample Sobic003G030500 Sobic003G030500 Sobic007G102600 Sobic007G102600 Sobic003G030500--Sobic007G102600 Sobic006G095100 Sobic006G095100 Sobic003G030500--Sobic006G095100 Sobic003G124000 Sobic003G124000 Sobic003G030500--Sobic003G124000 Sobic001G092250 Sobic001G092250 Sobic003G030500--Sobic001G092250 Sobic005G086250 Sobic005G086250 Sobic003G030500--Sobic005G086250 Sobic004G246000 Sobic004G246000 Sobic003G030500--Sobic004G246000 Sobic005G194400 Sobic005G194400 Sobic003G030500--Sobic005G194400 Sobic007G134300 Sobic007G134300 Sobic003G030500--Sobic007G134300 Sobic002G224800 Sobic002G224800 Sobic003G030500--Sobic002G224800 Sobic004G274300 Sobic004G274300 Sobic007G102600--Sobic004G274300 Sobic010G039150 Sobic010G039150 Sobic007G102600--Sobic010G039150 Sobic001G323101 Sobic001G323101 Sobic007G102600--Sobic001G323101 Sobic009G079600 Sobic009G079600 Sobic007G102600--Sobic009G079600 Sobic001G249800 Sobic001G249800 Sobic007G102600--Sobic001G249800 Sobic001G340100 Sobic001G340100 Sobic007G102600--Sobic001G340100 Sobic002G118000 Sobic002G118000 Sobic007G102600--Sobic002G118000 Sobic004G134400 Sobic004G134400 Sobic007G102600--Sobic004G134400 Sobic007G127200 Sobic007G127200 Sobic007G102600--Sobic007G127200 Sobic009G174150 Sobic009G174150 Sobic006G095100--Sobic009G174150 Sobic004G303433 Sobic004G303433 Sobic006G095100--Sobic004G303433 Sobic006G095100--Sobic003G030500 Sobic009G016666 Sobic009G016666 Sobic006G095100--Sobic009G016666 Sobic001G535850 Sobic001G535850 Sobic006G095100--Sobic001G535850 Sobic010G186900 Sobic010G186900 Sobic006G095100--Sobic010G186900 Sobic005G104900 Sobic005G104900 Sobic006G095100--Sobic005G104900 Sobic009G204501 Sobic009G204501 Sobic006G095100--Sobic009G204501 Sobic001G394532 Sobic001G394532 Sobic006G095100--Sobic001G394532 Sobic004G054600 Sobic004G054600 Sobic003G124000--Sobic004G054600 Sobic002G139700 Sobic002G139700 Sobic003G124000--Sobic002G139700 Sobic003G124000--Sobic003G030500 Sobic001G032550 Sobic001G032550 Sobic003G124000--Sobic001G032550 Sobic006G033601 Sobic006G033601 Sobic003G124000--Sobic006G033601 Sobic009G245650 Sobic009G245650 Sobic003G124000--Sobic009G245650 Sobic003G124000--Sobic006G095100 Sobic001G408500 Sobic001G408500 Sobic003G124000--Sobic001G408500 Sobic009G079400 Sobic009G079400 Sobic003G124000--Sobic009G079400 Sobic001G092250--Sobic003G030500 Sobic007G113101 Sobic007G113101 Sobic001G092250--Sobic007G113101 Sobic001G092250--Sobic003G124000 Sobic006G102200 Sobic006G102200 Sobic001G092250--Sobic006G102200 Sobic001G092250--Sobic004G246000 Sobic007G085400 Sobic007G085400 Sobic001G092250--Sobic007G085400 Sobic001G092250--Sobic006G095100 Sobic001G060732 Sobic001G060732 Sobic001G092250--Sobic001G060732 Sobic001G092250--Sobic010G186900 Sobic009G184900 Sobic009G184900 Sobic005G086250--Sobic009G184900 Sobic008G055300 Sobic008G055300 Sobic005G086250--Sobic008G055300 Sobic003G187300 Sobic003G187300 Sobic005G086250--Sobic003G187300 Sobic005G086250--Sobic003G030500 Sobic006G049200 Sobic006G049200 Sobic005G086250--Sobic006G049200 Sobic001G087800 Sobic001G087800 Sobic005G086250--Sobic001G087800 Sobic003G334200 Sobic003G334200 Sobic005G086250--Sobic003G334200 Sobic003G301400 Sobic003G301400 Sobic005G086250--Sobic003G301400 Sobic005G086250--Sobic004G246000 Sobic004G215650 Sobic004G215650 Sobic004G246000--Sobic004G215650 Sobic007G163200 Sobic007G163200 Sobic004G246000--Sobic007G163200 Sobic001G504300 Sobic001G504300 Sobic004G246000--Sobic001G504300 Sobic003G414200 Sobic003G414200 Sobic004G246000--Sobic003G414200 Sobic004G194600 Sobic004G194600 Sobic004G246000--Sobic004G194600 Sobic010G123650 Sobic010G123650 Sobic004G246000--Sobic010G123650 Sobic003G123950 Sobic003G123950 Sobic004G246000--Sobic003G123950 Sobic003G168700 Sobic003G168700 Sobic004G246000--Sobic003G168700 Sobic004G246000--Sobic002G118000 Sobic005G194400--Sobic002G118000 Sobic003G168600 Sobic003G168600 Sobic005G194400--Sobic003G168600 Sobic009G209650 Sobic009G209650 Sobic005G194400--Sobic009G209650 Sobic005G173100 Sobic005G173100 Sobic005G194400--Sobic005G173100 SobicK032350 SobicK032350 Sobic005G194400--SobicK032350 Sobic007G103200 Sobic007G103200 Sobic005G194400--Sobic007G103200 Sobic004G120150 Sobic004G120150 Sobic005G194400--Sobic004G120150 SobicK031300 SobicK031300 Sobic005G194400--SobicK031300 Sobic009G095720 Sobic009G095720 Sobic005G194400--Sobic009G095720 SobicK032600 SobicK032600 Sobic007G134300--SobicK032600 SobicK032400 SobicK032400 Sobic007G134300--SobicK032400 Sobic004G206000 Sobic004G206000 Sobic007G134300--Sobic004G206000 Sobic007G116150 Sobic007G116150 Sobic007G134300--Sobic007G116150 Sobic007G134300--Sobic009G209650 Sobic007G134300--SobicK032350 Sobic002G126700 Sobic002G126700 Sobic007G134300--Sobic002G126700 Sobic007G134300--SobicK031300 Sobic001G081450 Sobic001G081450 Sobic007G134300--Sobic001G081450 Sobic008G093300 Sobic008G093300 Sobic002G224800--Sobic008G093300 Sobic010G052100 Sobic010G052100 Sobic002G224800--Sobic010G052100 Sobic010G247750 Sobic010G247750 Sobic002G224800--Sobic010G247750 Sobic009G094100 Sobic009G094100 Sobic002G224800--Sobic009G094100 Sobic003G268100 Sobic003G268100 Sobic002G224800--Sobic003G268100 Sobic002G224800--Sobic007G127200 Sobic002G154450 Sobic002G154450 Sobic002G224800--Sobic002G154450 Sobic005G176300 Sobic005G176300 Sobic002G224800--Sobic005G176300 Sobic002G224800--Sobic007G103200
Octagon: transcription factors


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