Gene annotation
Transcriptome id Sobic.004G246000.1
Synonym ATFAS4, Sb04g028590, FAS4
Functional annotation pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed
UniProt A0A194YSJ9
Pfam PF00270 PF00271 PF04408 PF07717
Panther DB PTHR18934 PTHR18934:SF99
NCBI CDD -
KEGG Orthology K14780; DHX37, ATP-dependent RNA helicase DHX37/DHR1
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding GO:0004386helicase activity


Orthologs (automatic annotation)
TAIR AT1G33390 : RNA helicase family protein
RAP-DB (Rice) LOC_Os02g50370.1 : helicase domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a021963
Brachypodium KQK02016 , PNT69681 , PNT69680 , PNT69683 , PNT69682
Barley HORVU0Hr1G039590.4 , HORVU0Hr1G039590.5 , HORVU0Hr1G039590.6 , HORVU0Hr1G039590.7 , HORVU0Hr1G039590.1 , HORVU0Hr1G039590.2 , HORVU0Hr1G039590.3 , HORVU0Hr1G039590.8 , HORVU0Hr1G039590.9 , HORVU0Hr1G039590.30 , HORVU0Hr1G039590.10 , HORVU0Hr1G039590.18 , HORVU0Hr1G039590.20 , HORVU0Hr1G039590.16 , HORVU0Hr1G039590.17 , HORVU0Hr1G039590.14 , HORVU0Hr1G039590.15 , HORVU0Hr1G039590.12 , HORVU0Hr1G039590.13 , HORVU0Hr1G039590.11 , HORVU0Hr1G039590.19 , HORVU0Hr1G039590.29 , HORVU0Hr1G039590.28 , HORVU0Hr1G039590.27 , HORVU0Hr1G039590.26 , HORVU0Hr1G039590.25 , HORVU0Hr1G039590.24 , HORVU0Hr1G039590.23 , HORVU0Hr1G039590.22 , HORVU0Hr1G039590.21
Wheat TraesCS6A02G299400 , TraesCS6A02G299400 , TraesCS6B02G206600 , TraesCS6B02G329000 , TraesCS6D02G279300 , TraesCS6A02G178200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G215650 - -
2 Sobic.007G163200 flavin monooxygenase, putative, expressed K11816: indole-3-pyruvate monooxygenase
3 Sobic.001G504300 - -
4 Sobic.003G414200 Zinc finger, C3HC4 type domain containing protein, expressed -
5 Sobic.004G194600 - -
6 Sobic.010G123650 - -
7 Sobic.003G123950 - -
8 Sobic.003G168700 "oxidative phosphorylation, ATP production, stroma side of thylakoid membranes"(PubMedID : 8481382)@cytochrome b6, putative, expressed K02635: cytochrome b6
9 Sobic.002G118000 ATP synthase, putative, expressed -
10 Sobic.001G045100 peroxidase precursor, putative, expressed K00430: peroxidase
11 Sobic.001G087850 - -
12 Sobic.004G317050 - -
13 Sobic.001G323101 - -
14 Sobic.001G045900 polygalacturonase, putative, expressed -
15 Sobic.001G249000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transmembrane amino acid transporter protein, putative, expressed -
16 Sobic.001G066800 serpin domain containing protein, putative, expressed K13963: serpin B
17 Sobic.009G079400 EMB2261, putative, expressed -
18 Sobic.004G207733 - -
19 Sobic.003G112100 expansin precursor, putative, expressed -
20 Sobic.009G178000 Myb transcription factor, putative, expressed -


Gene co-expression network
sample Sobic004G246000 Sobic004G246000 Sobic004G215650 Sobic004G215650 Sobic004G246000--Sobic004G215650 Sobic007G163200 Sobic007G163200 Sobic004G246000--Sobic007G163200 Sobic001G504300 Sobic001G504300 Sobic004G246000--Sobic001G504300 Sobic003G414200 Sobic003G414200 Sobic004G246000--Sobic003G414200 Sobic004G194600 Sobic004G194600 Sobic004G246000--Sobic004G194600 Sobic010G123650 Sobic010G123650 Sobic004G246000--Sobic010G123650 Sobic003G123950 Sobic003G123950 Sobic004G246000--Sobic003G123950 Sobic003G168700 Sobic003G168700 Sobic004G246000--Sobic003G168700 Sobic002G118000 Sobic002G118000 Sobic004G246000--Sobic002G118000 Sobic004G215650--Sobic007G163200 Sobic004G215650--Sobic001G504300 Sobic004G215650--Sobic003G414200 Sobic004G215650--Sobic003G168700 Sobic004G215650--Sobic010G123650 Sobic004G215650--Sobic004G194600 Sobic004G215650--Sobic003G123950 Sobic001G045100 Sobic001G045100 Sobic004G215650--Sobic001G045100 Sobic003G112100 Sobic003G112100 Sobic004G215650--Sobic003G112100 Sobic007G163200--Sobic004G215650 Sobic007G163200--Sobic001G504300 Sobic007G163200--Sobic003G414200 Sobic007G163200--Sobic003G123950 Sobic007G163200--Sobic004G194600 Sobic001G258700 Sobic001G258700 Sobic007G163200--Sobic001G258700 Sobic007G163200--Sobic010G123650 Sobic001G284300 Sobic001G284300 Sobic007G163200--Sobic001G284300 Sobic007G163200--Sobic003G168700 Sobic001G504300--Sobic003G414200 Sobic001G504300--Sobic004G215650 Sobic006G064900 Sobic006G064900 Sobic001G504300--Sobic006G064900 Sobic001G087850 Sobic001G087850 Sobic001G504300--Sobic001G087850 Sobic001G504300--Sobic010G123650 Sobic006G065000 Sobic006G065000 Sobic001G504300--Sobic006G065000 Sobic001G504300--Sobic004G194600 Sobic004G140900 Sobic004G140900 Sobic001G504300--Sobic004G140900 Sobic004G207733 Sobic004G207733 Sobic001G504300--Sobic004G207733 Sobic003G414200--Sobic001G504300 Sobic003G414200--Sobic004G215650 Sobic003G414200--Sobic004G140900 Sobic003G414200--Sobic010G123650 Sobic003G414200--Sobic001G087850 Sobic003G414200--Sobic007G163200 Sobic003G414200--Sobic006G064900 Sobic001G032850 Sobic001G032850 Sobic003G414200--Sobic001G032850 Sobic003G414200--Sobic004G194600 Sobic001G323101 Sobic001G323101 Sobic004G194600--Sobic001G323101 Sobic004G194600--Sobic001G045100 Sobic010G225175 Sobic010G225175 Sobic004G194600--Sobic010G225175 Sobic001G045900 Sobic001G045900 Sobic004G194600--Sobic001G045900 Sobic004G143550 Sobic004G143550 Sobic004G194600--Sobic004G143550 Sobic009G229500 Sobic009G229500 Sobic004G194600--Sobic009G229500 Sobic004G194600--Sobic003G112100 Sobic004G194600--Sobic001G504300 Sobic004G194600--Sobic004G207733 Sobic010G123650--Sobic001G087850 Sobic010G123650--Sobic004G207733 Sobic003G404050 Sobic003G404050 Sobic010G123650--Sobic003G404050 Sobic002G147550 Sobic002G147550 Sobic010G123650--Sobic002G147550 Sobic010G123650--Sobic003G112100 Sobic001G436450 Sobic001G436450 Sobic010G123650--Sobic001G436450 Sobic010G123650--Sobic003G168700 Sobic006G176900 Sobic006G176900 Sobic010G123650--Sobic006G176900 Sobic010G123650--Sobic001G045900 Sobic008G156800 Sobic008G156800 Sobic003G123950--Sobic008G156800 Sobic003G396050 Sobic003G396050 Sobic003G123950--Sobic003G396050 Sobic003G123950--Sobic010G123650 Sobic003G123950--Sobic003G168700 Sobic003G123950--Sobic003G112100 Sobic003G123950--Sobic004G215650 Sobic002G170000 Sobic002G170000 Sobic003G123950--Sobic002G170000 Sobic004G129400 Sobic004G129400 Sobic003G123950--Sobic004G129400 Sobic010G053700 Sobic010G053700 Sobic003G123950--Sobic010G053700 Sobic002G042700 Sobic002G042700 Sobic003G168700--Sobic002G042700 Sobic003G168700--Sobic003G112100 Sobic003G394701 Sobic003G394701 Sobic003G168700--Sobic003G394701 Sobic003G168700--Sobic010G123650 Sobic003G168700--Sobic003G404050 Sobic003G168700--Sobic004G215650 Sobic003G168700--Sobic008G156800 Sobic003G029150 Sobic003G029150 Sobic003G168700--Sobic003G029150 Sobic003G168700--Sobic004G129400 Sobic009G209650 Sobic009G209650 Sobic002G118000--Sobic009G209650 Sobic003G168600 Sobic003G168600 Sobic002G118000--Sobic003G168600 Sobic005G194400 Sobic005G194400 Sobic002G118000--Sobic005G194400 Sobic007G103200 Sobic007G103200 Sobic002G118000--Sobic007G103200 Sobic004G272950 Sobic004G272950 Sobic002G118000--Sobic004G272950 Sobic005G173100 Sobic005G173100 Sobic002G118000--Sobic005G173100 Sobic007G132650 Sobic007G132650 Sobic002G118000--Sobic007G132650 Sobic003G296250 Sobic003G296250 Sobic002G118000--Sobic003G296250 SobicK032350 SobicK032350 Sobic002G118000--SobicK032350
Octagon: transcription factors


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