Gene annotation
Transcriptome id Sobic.001G045900.1
Synonym Sb01g004230, ADPG1
Functional annotation polygalacturonase, putative, expressed
UniProt C5WW45
Pfam PF12708
Panther DB PTHR31375 PTHR31375:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G57510 : Pectin lyase-like superfamily protein
RAP-DB (Rice) LOC_Os07g10740.1 : polygalacturonase, putative, expressed
MaizeGDB (Corn) Zm00025a008672 , Zm00025a008671
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G127733 - -
2 Sobic.010G052100 S-locus-like receptor protein kinase, putative, expressed -
3 Sobic.007G127200 ECT protein, putative, expressed K07877: Ras-related protein Rab-2A
4 Sobic.010G225175 - -
5 Sobic.004G207733 - -
6 Sobic.006G176900 - -
7 Sobic.001G045100 peroxidase precursor, putative, expressed K00430: peroxidase
8 Sobic.007G103200 - -
9 Sobic.002G154450 - -
10 Sobic.003G029150 - -
11 Sobic.006G149900 cytokinin inducible protein, putative, expressed -
12 Sobic.004G127350 - -
13 Sobic.009G094100 - -
14 Sobic.010G247750 - -
15 Sobic.003G112100 expansin precursor, putative, expressed -
16 Sobic.001G323101 - -
17 Sobic.006G035350 - K02986: RP-S4, small subunit ribosomal protein S4
18 Sobic.008G093300 - -
19 Sobic.009G229500 expressed protein -
20 Sobic.003G251000 S-locus-like receptor protein kinase, putative, expressed -


Gene co-expression network
sample Sobic001G045900 Sobic001G045900 Sobic004G127733 Sobic004G127733 Sobic001G045900--Sobic004G127733 Sobic010G052100 Sobic010G052100 Sobic001G045900--Sobic010G052100 Sobic007G127200 Sobic007G127200 Sobic001G045900--Sobic007G127200 Sobic010G225175 Sobic010G225175 Sobic001G045900--Sobic010G225175 Sobic004G207733 Sobic004G207733 Sobic001G045900--Sobic004G207733 Sobic006G176900 Sobic006G176900 Sobic001G045900--Sobic006G176900 Sobic001G045100 Sobic001G045100 Sobic001G045900--Sobic001G045100 Sobic007G103200 Sobic007G103200 Sobic001G045900--Sobic007G103200 Sobic002G154450 Sobic002G154450 Sobic001G045900--Sobic002G154450 Sobic004G127733--Sobic006G176900 Sobic006G035350 Sobic006G035350 Sobic004G127733--Sobic006G035350 Sobic004G127733--Sobic007G103200 Sobic004G127733--Sobic007G127200 Sobic004G127733--Sobic001G045900 Sobic008G093300 Sobic008G093300 Sobic004G127733--Sobic008G093300 Sobic004G127733--Sobic002G154450 Sobic004G127733--Sobic010G052100 Sobic010G247750 Sobic010G247750 Sobic004G127733--Sobic010G247750 Sobic010G052100--Sobic010G225175 Sobic010G052100--Sobic001G045900 Sobic010G052100--Sobic002G154450 Sobic010G052100--Sobic007G127200 Sobic004G127350 Sobic004G127350 Sobic010G052100--Sobic004G127350 Sobic009G094100 Sobic009G094100 Sobic010G052100--Sobic009G094100 Sobic010G052100--Sobic007G103200 Sobic010G052100--Sobic010G247750 Sobic010G052100--Sobic004G127733 Sobic007G127200--Sobic010G247750 Sobic007G127200--Sobic004G127733 Sobic004G134400 Sobic004G134400 Sobic007G127200--Sobic004G134400 Sobic007G127200--Sobic010G052100 Sobic007G127200--Sobic001G045900 Sobic009G079600 Sobic009G079600 Sobic007G127200--Sobic009G079600 Sobic007G127200--Sobic006G035350 Sobic007G127200--Sobic008G093300 Sobic003G260500 Sobic003G260500 Sobic007G127200--Sobic003G260500 Sobic010G225175--Sobic010G052100 Sobic010G225175--Sobic001G045900 Sobic010G225175--Sobic007G127200 Sobic010G225175--Sobic004G127350 Sobic010G225175--Sobic002G154450 Sobic010G149000 Sobic010G149000 Sobic010G225175--Sobic010G149000 Sobic006G037800 Sobic006G037800 Sobic010G225175--Sobic006G037800 Sobic010G225175--Sobic010G247750 Sobic010G225175--Sobic001G045100 Sobic001G087850 Sobic001G087850 Sobic004G207733--Sobic001G087850 Sobic004G207733--Sobic001G045900 Sobic004G207733--Sobic006G176900 Sobic004G207733--Sobic004G127733 Sobic010G123650 Sobic010G123650 Sobic004G207733--Sobic010G123650 Sobic002G147550 Sobic002G147550 Sobic004G207733--Sobic002G147550 Sobic003G112100 Sobic003G112100 Sobic004G207733--Sobic003G112100 Sobic004G207733--Sobic002G154450 Sobic001G436450 Sobic001G436450 Sobic004G207733--Sobic001G436450 Sobic006G176900--Sobic004G127733 Sobic006G176900--Sobic003G112100 Sobic006G176900--Sobic001G045900 Sobic006G176900--Sobic002G154450 Sobic006G176900--Sobic004G207733 Sobic006G176900--Sobic002G147550 Sobic008G119600 Sobic008G119600 Sobic006G176900--Sobic008G119600 Sobic004G129400 Sobic004G129400 Sobic006G176900--Sobic004G129400 Sobic006G176900--Sobic007G127200 Sobic001G045100--Sobic001G045900 Sobic003G029150 Sobic003G029150 Sobic001G045100--Sobic003G029150 Sobic001G323101 Sobic001G323101 Sobic001G045100--Sobic001G323101 Sobic001G045100--Sobic007G127200 Sobic001G045100--Sobic006G176900 Sobic001G045100--Sobic003G112100 Sobic001G045100--Sobic004G127733 Sobic007G132650 Sobic007G132650 Sobic001G045100--Sobic007G132650 Sobic001G045100--Sobic007G103200 Sobic007G103200--Sobic009G094100 Sobic007G103200--Sobic004G127733 Sobic004G130500 Sobic004G130500 Sobic007G103200--Sobic004G130500 Sobic007G103200--Sobic006G035350 Sobic007G103200--Sobic010G247750 Sobic007G103200--Sobic004G127350 Sobic007G103200--Sobic010G052100 Sobic007G103200--Sobic007G127200 Sobic007G103200--Sobic001G045900 Sobic002G154450--Sobic010G052100 Sobic002G154450--Sobic004G127733 Sobic002G154450--Sobic007G127200 Sobic002G154450--Sobic006G176900 Sobic002G154450--Sobic001G045900 Sobic003G251000 Sobic003G251000 Sobic002G154450--Sobic003G251000 Sobic006G149900 Sobic006G149900 Sobic002G154450--Sobic006G149900 Sobic002G154450--Sobic010G149000 Sobic005G154600 Sobic005G154600 Sobic002G154450--Sobic005G154600
Octagon: transcription factors


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