Gene annotation
Transcriptome id Sobic.003G172800.2
Synonym Sb03g020182
Functional annotation ribulose bisphosphate carboxylase large chain precursor, putative, expressed
UniProt C5XLE8
Pfam PF00016
Panther DB PTHR23321 PTHR23321:SF33
NCBI CDD -
KEGG Orthology K01601; ribulose-bisphosphate carboxylase large chain
Gene Ontology GO:0000287; magnesium ion binding


Orthologs (automatic annotation)
TAIR ATCG00490 : ribulose-bisphosphate carboxylases
RAP-DB (Rice) LOC_Os10g21268.1 : ribulose bisphosphate carboxylase large chain precursor, putative, expressed
MaizeGDB (Corn) Zm00025a057690 , Zm00025a057755 , Zm00025a057611 , Zm00025a057922 , Zm00025a050423 , Zm00025a057158 , Zm00025a057581 , Zm00025a057763 , Zm00025a003956 , Zm00025a057708 , Zm00025a057669 , Zm00025a057564 , Zm00025a058088 , Zm00025a058029 , Zm00025a007224
Brachypodium KQK18174 , KQJ96833 , KQK05580 , PNT67423 , KQK04347
Barley HORVU0Hr1G024560.2 , HORVU0Hr1G031270.3 , HORVU0Hr1G031270.2 , HORVU3Hr1G055820.1 , HORVU5Hr1G064700.8 , HORVU3Hr1G055820.2 , HORVU5Hr1G064700.2 , HORVU5Hr1G064700.3 , AGP50763 , HORVU5Hr1G064700.7 , HORVU5Hr1G064700.4 , HORVU5Hr1G064700.5 , HORVU7Hr1G091620.5 , HORVU0Hr1G031270.1 , HORVU7Hr1G091620.3 , HORVU0Hr1G031270.4 , HORVU6Hr1G047870.1 , HORVU6Hr1G047870.2 , HORVU6Hr1G047870.3 , HORVU6Hr1G047870.4 , HORVU6Hr1G047870.6 , HORVU6Hr1G047870.7 , HORVU0Hr1G029790.2 , HORVU0Hr1G027620.1 , HORVU7Hr1G091620.2 , HORVU7Hr1G091620.1 , HORVU0Hr1G029790.4 , HORVU0Hr1G029790.3 , HORVU7Hr1G091620.6 , HORVU0Hr1G029790.1 , HORVU7Hr1G091620.4 , HORVU6Hr1G049260.3 , HORVU6Hr1G049260.2 , HORVU6Hr1G049260.1 , HORVU6Hr1G049260.6 , HORVU6Hr1G049260.5 , HORVU6Hr1G049260.4
Wheat TraesCS3B02G186100
Populus PNS24157


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G039150 - -
2 Sobic.001G506200 - -
3 Sobic.003G053100 - -
4 Sobic.006G029850 - -
5 Sobic.005G139900 chloroplast 30S ribosomal protein S7, putative, expressed K02992: RP-S7, MRPS7, small subunit ribosomal protein S7
6 Sobic.001G261444 - -
7 Sobic.004G303433 - K02950: RP-S12, MRPS12, small subunit ribosomal protein S12
8 Sobic.010G201332 - -
9 Sobic.001G383350 - -
10 Sobic.004G120150 - K02132: ATPeF1A, ATP5A1, F-type H+-transporting ATPase subunit alpha
11 Sobic.K032200 ATP synthase protein MI25, putative, expressed -
12 Sobic.009G257000 - -
13 Sobic.003G172300 photosystem II P680 chlorophyll A apoprotein, putative, expressed K02704: photosystem II CP47 chlorophyll apoprotein
14 Sobic.004G115100 DNA-directed RNA polymerase subunit beta, putative, expressed K03043: DNA-directed RNA polymerase subunit beta
15 Sobic.003G159101 - -
16 Sobic.009G079600 - -
17 Sobic.005G036450 - -
18 Sobic.007G098050 - -
19 Sobic.003G173116 - K02724: photosystem II PsbZ protein
20 Sobic.001G475950 - -


Gene co-expression network
sample Sobic003G172800 Sobic003G172800 Sobic010G039150 Sobic010G039150 Sobic003G172800--Sobic010G039150 Sobic001G506200 Sobic001G506200 Sobic003G172800--Sobic001G506200 Sobic003G053100 Sobic003G053100 Sobic003G172800--Sobic003G053100 Sobic006G029850 Sobic006G029850 Sobic003G172800--Sobic006G029850 Sobic005G139900 Sobic005G139900 Sobic003G172800--Sobic005G139900 Sobic001G261444 Sobic001G261444 Sobic003G172800--Sobic001G261444 Sobic004G303433 Sobic004G303433 Sobic003G172800--Sobic004G303433 Sobic010G201332 Sobic010G201332 Sobic003G172800--Sobic010G201332 Sobic001G383350 Sobic001G383350 Sobic003G172800--Sobic001G383350 Sobic009G079600 Sobic009G079600 Sobic010G039150--Sobic009G079600 Sobic010G039150--Sobic006G029850 Sobic004G274300 Sobic004G274300 Sobic010G039150--Sobic004G274300 Sobic007G132650 Sobic007G132650 Sobic010G039150--Sobic007G132650 Sobic004G134400 Sobic004G134400 Sobic010G039150--Sobic004G134400 Sobic003G187600 Sobic003G187600 Sobic010G039150--Sobic003G187600 Sobic003G260500 Sobic003G260500 Sobic010G039150--Sobic003G260500 Sobic004G115100 Sobic004G115100 Sobic010G039150--Sobic004G115100 Sobic001G323101 Sobic001G323101 Sobic010G039150--Sobic001G323101 Sobic001G506200--Sobic010G201332 SobicK032200 SobicK032200 Sobic001G506200--SobicK032200 Sobic001G475950 Sobic001G475950 Sobic001G506200--Sobic001G475950 Sobic004G120150 Sobic004G120150 Sobic001G506200--Sobic004G120150 Sobic001G506200--Sobic006G029850 Sobic001G506200--Sobic001G261444 SobicK032350 SobicK032350 Sobic001G506200--SobicK032350 Sobic001G506200--Sobic001G383350 Sobic004G126050 Sobic004G126050 Sobic001G506200--Sobic004G126050 Sobic003G053100--Sobic005G139900 Sobic003G173116 Sobic003G173116 Sobic003G053100--Sobic003G173116 Sobic005G104900 Sobic005G104900 Sobic003G053100--Sobic005G104900 Sobic003G172600 Sobic003G172600 Sobic003G053100--Sobic003G172600 Sobic003G159101 Sobic003G159101 Sobic003G053100--Sobic003G159101 Sobic003G169200 Sobic003G169200 Sobic003G053100--Sobic003G169200 Sobic001G535850 Sobic001G535850 Sobic003G053100--Sobic001G535850 Sobic003G053100--Sobic004G303433 Sobic001G230050 Sobic001G230050 Sobic003G053100--Sobic001G230050 Sobic006G029850--Sobic001G383350 Sobic006G029850--Sobic004G115100 SobicK032400 SobicK032400 Sobic006G029850--SobicK032400 Sobic007G200700 Sobic007G200700 Sobic006G029850--Sobic007G200700 Sobic006G029850--SobicK032350 Sobic006G029850--Sobic001G261444 Sobic006G029850--SobicK032200 Sobic006G029850--Sobic004G120150 SobicK032600 SobicK032600 Sobic006G029850--SobicK032600 Sobic005G139900--Sobic003G169200 Sobic005G139900--Sobic003G173116 Sobic005G139900--Sobic004G303433 Sobic005G139900--Sobic001G535850 Sobic005G139900--Sobic003G053100 Sobic010G206600 Sobic010G206600 Sobic005G139900--Sobic010G206600 Sobic005G139900--Sobic003G172600 Sobic001G530201 Sobic001G530201 Sobic005G139900--Sobic001G530201 Sobic005G139900--Sobic001G230050 Sobic001G261444--SobicK032200 Sobic001G261444--Sobic007G200700 Sobic001G261444--Sobic001G383350 Sobic001G261444--Sobic004G115100 Sobic001G261444--Sobic001G475950 Sobic003G161900 Sobic003G161900 Sobic001G261444--Sobic003G161900 Sobic001G261444--Sobic006G029850 Sobic001G261444--Sobic010G201332 Sobic008G100201 Sobic008G100201 Sobic001G261444--Sobic008G100201 Sobic004G303433--Sobic005G139900 Sobic004G303433--Sobic001G535850 Sobic004G303433--Sobic003G159101 Sobic001G394532 Sobic001G394532 Sobic004G303433--Sobic001G394532 Sobic005G036450 Sobic005G036450 Sobic004G303433--Sobic005G036450 Sobic005G184900 Sobic005G184900 Sobic004G303433--Sobic005G184900 Sobic003G286450 Sobic003G286450 Sobic004G303433--Sobic003G286450 Sobic004G303433--Sobic003G169200 Sobic004G303433--Sobic003G173116 Sobic010G201332--SobicK032200 Sobic005G065800 Sobic005G065800 Sobic010G201332--Sobic005G065800 Sobic002G358450 Sobic002G358450 Sobic010G201332--Sobic002G358450 Sobic010G201332--Sobic001G475950 Sobic010G201332--Sobic001G506200 Sobic010G201332--Sobic001G261444 Sobic010G201332--Sobic001G383350 Sobic007G183200 Sobic007G183200 Sobic010G201332--Sobic007G183200 Sobic010G201332--Sobic004G126050 Sobic001G383350--Sobic006G029850 Sobic001G383350--Sobic007G200700 Sobic001G383350--Sobic004G115100 Sobic001G383350--Sobic001G261444 Sobic001G383350--SobicK032400 Sobic001G383350--SobicK032200 Sobic001G383350--SobicK032600 Sobic001G383350--Sobic008G100201 Sobic002G112500 Sobic002G112500 Sobic001G383350--Sobic002G112500
Octagon: transcription factors


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