Gene annotation
Transcriptome id Sobic.005G139900.1
Synonym Sb05g020390
Functional annotation chloroplast 30S ribosomal protein S7, putative, expressed
UniProt Q09EK9 , A0A109NDH7 , H0I4E8 , C5Y3R9 , A1E9W9
Pfam PF00177
Panther DB PTHR11205 PTHR11205:SF21
NCBI CDD KOG3291; Ribosomal protein S7
KEGG Orthology K02992; RP-S7, MRPS7, small subunit ribosomal protein S7
Gene Ontology GO:0006412; translation


Orthologs (automatic annotation)
TAIR ATCG01240 : ribosomal protein S7
RAP-DB (Rice) LOC_Os08g15246.1 : chloroplast 30S ribosomal protein S7, putative, expressed
MaizeGDB (Corn) Zm00025a010044 , Zm00025a010045 , Zm00025a010046 , Zm00025a057516 , Zm00025a001410 , Zm00025a057573 , Zm00025a057572 , Zm00025a058070 , Zm00025a038473 , Zm00025a010031 , Zm00025a054641 , Zm00025a057602 , Zm00025a057601 , Zm00025a057567 , Zm00025a009803
Brachypodium KQJ88318 , KQK18210 , KQK12735 , PNT63586 , PNT65083 , KQJ89171 , PNT67428
Barley HORVU0Hr1G034730.2 , HORVU0Hr1G034730.1 , HORVU5Hr1G064870.1 , HORVU0Hr1G034770.2 , HORVU0Hr1G034770.1 , HORVU5Hr1G064870.2 , HORVU0Hr1G034830.1 , AGP50799 , HORVU4Hr1G016750.1 , HORVU5Hr1G032310.4 , HORVU5Hr1G032310.2 , HORVU5Hr1G032310.3 , HORVU5Hr1G032310.1 , HORVU2Hr1G121660.2 , HORVU0Hr1G031420.1 , HORVU2Hr1G121660.1 , HORVU5Hr1G004530.2 , HORVU5Hr1G004530.1 , HORVU6Hr1G046780.1 , HORVU6Hr1G049520.1 , HORVU6Hr1G049520.2 , HORVU6Hr1G046780.2 , HORVU2Hr1G121420.1 , HORVU2Hr1G121420.2 , HORVU4Hr1G048750.1 , HORVU7Hr1G107890.1 , HORVU7Hr1G107890.2
Wheat TraesCS1B02G406600 , TraesCS4B02G238600 , TraesCS4A02G156100 , TraesCSU02G149800 , TraesCS4A02G024600
Populus PNT08286 , PNT12267


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G169200 chloroplast ATP synthase a chain precursor, putative, expressed K02108: ATPF0A, F-type H+-transporting ATPase subunit a
2 Sobic.003G173116 - K02724: photosystem II PsbZ protein
3 Sobic.004G303433 - K02950: RP-S12, MRPS12, small subunit ribosomal protein S12
4 Sobic.001G535850 - -
5 Sobic.003G053100 - -
6 Sobic.010G206600 NADPH-dependent oxidoreductase, putative, expressed -
7 Sobic.003G172600 - -
8 Sobic.001G530201 - -
9 Sobic.001G230050 - K05580: NAD(P)H-quinone oxidoreductase subunit I
10 Sobic.001G394532 - K02110: ATPF0C, F-type H+-transporting ATPase subunit c
11 Sobic.003G159101 - -
12 Sobic.005G104900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.009G174150 - -
14 Sobic.005G139750 - -
15 Sobic.003G286450 - -
16 Sobic.005G036450 - -
17 Sobic.K032300 uncharacterized protein ycf72, putative -
18 Sobic.006G183100 RFC2 - Putative clamp loader of PCNA, replication factor C subunit 2, expressed K10755: replication factor C subunit 2/4
19 Sobic.002G083332 - -
20 Sobic.006G124800 - -


Gene co-expression network
sample Sobic005G139900 Sobic005G139900 Sobic003G169200 Sobic003G169200 Sobic005G139900--Sobic003G169200 Sobic003G173116 Sobic003G173116 Sobic005G139900--Sobic003G173116 Sobic004G303433 Sobic004G303433 Sobic005G139900--Sobic004G303433 Sobic001G535850 Sobic001G535850 Sobic005G139900--Sobic001G535850 Sobic003G053100 Sobic003G053100 Sobic005G139900--Sobic003G053100 Sobic010G206600 Sobic010G206600 Sobic005G139900--Sobic010G206600 Sobic003G172600 Sobic003G172600 Sobic005G139900--Sobic003G172600 Sobic001G530201 Sobic001G530201 Sobic005G139900--Sobic001G530201 Sobic001G230050 Sobic001G230050 Sobic005G139900--Sobic001G230050 Sobic003G169200--Sobic001G230050 Sobic003G169200--Sobic010G206600 Sobic003G169200--Sobic003G172600 Sobic003G169200--Sobic005G139900 SobicK032300 SobicK032300 Sobic003G169200--SobicK032300 Sobic001G394532 Sobic001G394532 Sobic003G169200--Sobic001G394532 Sobic003G169200--Sobic003G173116 Sobic003G169200--Sobic001G530201 Sobic003G159101 Sobic003G159101 Sobic003G169200--Sobic003G159101 Sobic003G173116--Sobic003G159101 Sobic003G173116--Sobic001G230050 Sobic003G173116--Sobic005G139900 Sobic009G174150 Sobic009G174150 Sobic003G173116--Sobic009G174150 Sobic003G173116--Sobic003G169200 Sobic003G173116--Sobic003G172600 Sobic003G173116--Sobic001G535850 Sobic003G173116--Sobic003G053100 Sobic003G173116--Sobic010G206600 Sobic004G303433--Sobic005G139900 Sobic004G303433--Sobic001G535850 Sobic004G303433--Sobic003G159101 Sobic004G303433--Sobic001G394532 Sobic005G036450 Sobic005G036450 Sobic004G303433--Sobic005G036450 Sobic005G184900 Sobic005G184900 Sobic004G303433--Sobic005G184900 Sobic003G286450 Sobic003G286450 Sobic004G303433--Sobic003G286450 Sobic004G303433--Sobic003G169200 Sobic004G303433--Sobic003G173116 Sobic001G535850--Sobic003G286450 Sobic001G535850--Sobic005G139900 Sobic001G535850--Sobic004G303433 Sobic001G535850--Sobic003G173116 Sobic001G535850--Sobic001G394532 Sobic001G535850--Sobic010G206600 Sobic005G139750 Sobic005G139750 Sobic001G535850--Sobic005G139750 Sobic001G154000 Sobic001G154000 Sobic001G535850--Sobic001G154000 Sobic005G104900 Sobic005G104900 Sobic001G535850--Sobic005G104900 Sobic003G053100--Sobic005G139900 Sobic003G053100--Sobic003G173116 Sobic003G053100--Sobic005G104900 Sobic003G053100--Sobic003G172600 Sobic003G053100--Sobic003G159101 Sobic003G053100--Sobic003G169200 Sobic003G053100--Sobic001G535850 Sobic003G053100--Sobic004G303433 Sobic003G053100--Sobic001G230050 Sobic010G206600--Sobic001G394532 Sobic010G206600--Sobic001G230050 Sobic010G206600--Sobic003G169200 Sobic010G206600--SobicK032300 Sobic006G183100 Sobic006G183100 Sobic010G206600--Sobic006G183100 Sobic006G124700 Sobic006G124700 Sobic010G206600--Sobic006G124700 Sobic003G172500 Sobic003G172500 Sobic010G206600--Sobic003G172500 Sobic010G206600--Sobic005G139900 Sobic010G206600--Sobic009G174150 Sobic003G172600--Sobic001G230050 Sobic006G124800 Sobic006G124800 Sobic003G172600--Sobic006G124800 Sobic003G172600--Sobic003G169200 Sobic003G172600--SobicK032300 Sobic003G172600--Sobic003G173116 Sobic003G172600--Sobic005G139900 Sobic003G117850 Sobic003G117850 Sobic003G172600--Sobic003G117850 Sobic003G172600--Sobic010G206600 Sobic003G172600--Sobic001G530201 Sobic001G530201--Sobic003G169200 Sobic001G530201--Sobic005G139900 Sobic002G083332 Sobic002G083332 Sobic001G530201--Sobic002G083332 Sobic001G530201--Sobic001G394532 Sobic001G530201--Sobic010G206600 Sobic001G530201--Sobic003G172600 Sobic001G530201--Sobic001G230050 Sobic001G182700 Sobic001G182700 Sobic001G530201--Sobic001G182700 Sobic001G530201--SobicK032300 Sobic001G230050--SobicK032300 Sobic001G230050--Sobic003G169200 Sobic001G230050--Sobic010G206600 Sobic001G230050--Sobic003G172600 Sobic001G230050--Sobic003G173116 Sobic001G230050--Sobic001G394532 Sobic001G230050--Sobic006G183100 Sobic001G230050--Sobic003G172500 Sobic001G230050--Sobic006G124700
Octagon: transcription factors


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