Gene annotation
Transcriptome id Sobic.001G394532.1
Synonym -
Functional annotation -
UniProt C5WVQ8 , A0A0G3XSS2 , A0A109NDX8 , A1E9R9
Pfam PF00137
Panther DB PTHR10031
NCBI CDD -
KEGG Orthology K02110; ATPF0C, F-type H+-transporting ATPase subunit c
Gene Ontology GO:0015078; proton transmembrane transporter activity


Orthologs (automatic annotation)
TAIR ATCG00140 : ATP synthase subunit C family protein
RAP-DB (Rice) LOC_Os10g21230.1 : ATP synthase C chain, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU0Hr1G037590.1 , HORVU6Hr1G049160.1 , HORVU0Hr1G034610.1 , AGP50750
Wheat TraesCS1B02G239600
Populus PNS90111 , PNT36885 , PNS95716 , PNT08272 , PNT08324


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G206600 NADPH-dependent oxidoreductase, putative, expressed -
2 Sobic.001G230050 - K05580: NAD(P)H-quinone oxidoreductase subunit I
3 Sobic.003G169200 chloroplast ATP synthase a chain precursor, putative, expressed K02108: ATPF0A, F-type H+-transporting ATPase subunit a
4 Sobic.K032300 uncharacterized protein ycf72, putative -
5 Sobic.001G535850 - -
6 Sobic.005G139900 chloroplast 30S ribosomal protein S7, putative, expressed K02992: RP-S7, MRPS7, small subunit ribosomal protein S7
7 Sobic.001G530201 - -
8 Sobic.006G183100 RFC2 - Putative clamp loader of PCNA, replication factor C subunit 2, expressed K10755: replication factor C subunit 2/4
9 Sobic.009G174150 - -
10 Sobic.004G303433 - K02950: RP-S12, MRPS12, small subunit ribosomal protein S12
11 Sobic.010G052866 - K02892: RP-L23, MRPL23, large subunit ribosomal protein L23
12 Sobic.006G124700 chloroplast 30S ribosomal protein S8, putative, expressed K02994: RP-S8, small subunit ribosomal protein S8
13 Sobic.003G172500 - -
14 Sobic.005G184900 - -
15 Sobic.003G173116 - K02724: photosystem II PsbZ protein
16 Sobic.003G286450 - -
17 Sobic.010G035600 - -
18 Sobic.003G159101 - -
19 Sobic.007G065000 proton-dependent oligopeptide transport, putative, expressed -
20 Sobic.003G172600 - -


Gene co-expression network
sample Sobic001G394532 Sobic001G394532 Sobic010G206600 Sobic010G206600 Sobic001G394532--Sobic010G206600 Sobic001G230050 Sobic001G230050 Sobic001G394532--Sobic001G230050 Sobic003G169200 Sobic003G169200 Sobic001G394532--Sobic003G169200 SobicK032300 SobicK032300 Sobic001G394532--SobicK032300 Sobic001G535850 Sobic001G535850 Sobic001G394532--Sobic001G535850 Sobic005G139900 Sobic005G139900 Sobic001G394532--Sobic005G139900 Sobic001G530201 Sobic001G530201 Sobic001G394532--Sobic001G530201 Sobic006G183100 Sobic006G183100 Sobic001G394532--Sobic006G183100 Sobic009G174150 Sobic009G174150 Sobic001G394532--Sobic009G174150 Sobic010G206600--Sobic001G394532 Sobic010G206600--Sobic001G230050 Sobic010G206600--Sobic003G169200 Sobic010G206600--SobicK032300 Sobic010G206600--Sobic006G183100 Sobic006G124700 Sobic006G124700 Sobic010G206600--Sobic006G124700 Sobic003G172500 Sobic003G172500 Sobic010G206600--Sobic003G172500 Sobic010G206600--Sobic005G139900 Sobic010G206600--Sobic009G174150 Sobic001G230050--SobicK032300 Sobic001G230050--Sobic003G169200 Sobic001G230050--Sobic010G206600 Sobic003G172600 Sobic003G172600 Sobic001G230050--Sobic003G172600 Sobic003G173116 Sobic003G173116 Sobic001G230050--Sobic003G173116 Sobic001G230050--Sobic001G394532 Sobic001G230050--Sobic006G183100 Sobic001G230050--Sobic003G172500 Sobic001G230050--Sobic006G124700 Sobic003G169200--Sobic001G230050 Sobic003G169200--Sobic010G206600 Sobic003G169200--Sobic003G172600 Sobic003G169200--Sobic005G139900 Sobic003G169200--SobicK032300 Sobic003G169200--Sobic001G394532 Sobic003G169200--Sobic003G173116 Sobic003G169200--Sobic001G530201 Sobic003G159101 Sobic003G159101 Sobic003G169200--Sobic003G159101 SobicK032300--Sobic001G230050 SobicK032300--Sobic003G172500 SobicK032300--Sobic006G124700 SobicK032300--Sobic010G206600 Sobic009G123100 Sobic009G123100 SobicK032300--Sobic009G123100 SobicK032300--Sobic006G183100 Sobic010G052866 Sobic010G052866 SobicK032300--Sobic010G052866 Sobic006G124800 Sobic006G124800 SobicK032300--Sobic006G124800 SobicK032300--Sobic003G169200 Sobic003G286450 Sobic003G286450 Sobic001G535850--Sobic003G286450 Sobic001G535850--Sobic005G139900 Sobic004G303433 Sobic004G303433 Sobic001G535850--Sobic004G303433 Sobic001G535850--Sobic003G173116 Sobic001G535850--Sobic001G394532 Sobic001G535850--Sobic010G206600 Sobic005G139750 Sobic005G139750 Sobic001G535850--Sobic005G139750 Sobic001G154000 Sobic001G154000 Sobic001G535850--Sobic001G154000 Sobic005G104900 Sobic005G104900 Sobic001G535850--Sobic005G104900 Sobic005G139900--Sobic003G169200 Sobic005G139900--Sobic003G173116 Sobic005G139900--Sobic004G303433 Sobic005G139900--Sobic001G535850 Sobic003G053100 Sobic003G053100 Sobic005G139900--Sobic003G053100 Sobic005G139900--Sobic010G206600 Sobic005G139900--Sobic003G172600 Sobic005G139900--Sobic001G530201 Sobic005G139900--Sobic001G230050 Sobic001G530201--Sobic003G169200 Sobic001G530201--Sobic005G139900 Sobic002G083332 Sobic002G083332 Sobic001G530201--Sobic002G083332 Sobic001G530201--Sobic001G394532 Sobic001G530201--Sobic010G206600 Sobic001G530201--Sobic003G172600 Sobic001G530201--Sobic001G230050 Sobic001G182700 Sobic001G182700 Sobic001G530201--Sobic001G182700 Sobic001G530201--SobicK032300 Sobic006G183100--SobicK032300 Sobic006G183100--Sobic006G124700 Sobic006G183100--Sobic001G230050 Sobic006G183100--Sobic010G206600 Sobic006G183100--Sobic003G172500 Sobic006G183100--Sobic009G123100 Sobic006G183100--Sobic001G394532 Sobic006G183100--Sobic006G124800 Sobic007G145801 Sobic007G145801 Sobic006G183100--Sobic007G145801 Sobic009G174150--Sobic003G173116 Sobic009G174150--Sobic001G230050 Sobic009G174150--Sobic010G206600 Sobic009G174150--Sobic003G169200 Sobic009G174150--Sobic001G394532 Sobic009G174150--Sobic003G159101 Sobic009G174150--Sobic010G052866 Sobic009G174150--Sobic001G535850 Sobic009G174150--SobicK032300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.